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AT1G10550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan:xyloglucosyl transferase 33
Curator
Summary (TAIR10)
Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It's expression is under epigenetic control by ATX1.
Computational
Description (TAIR10)
xyloglucan:xyloglucosyl transferase 33 (XTH33); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2022 Blast hits to 2008 proteins in 287 species: Archae - 0; Bacteria - 257; Metazoa - 0; Fungi - 351; Plants - 1343; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G10550-MONOMERCAZy:GH16EC:2.4.1.207eggNOG:COG2273
eggNOG:ENOG410IHC9EMBL:AC007067EMBL:AY086802EMBL:CP002684
EnsemblPlants:AT1G10550EnsemblPlants:AT1G10550.1entrez:837596Gene3D:2.60.120.200
GeneID:837596Genevisible:Q8LC45GO:GO:0004553GO:GO:0005618
GO:GO:0005887GO:GO:0009831GO:GO:0010411GO:GO:0016762
GO:GO:0042546GO:GO:0048046Gramene:AT1G10550.1hmmpanther:PTHR31062
hmmpanther:PTHR31062:SF25HOGENOM:HOG000236368InParanoid:Q8LC45InterPro:IPR000757
InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455iPTMnet:Q8LC45
KEGG:ath:AT1G10550KO:K08235OMA:GGKYPVNPaxDb:Q8LC45
Pfam:PF00722Pfam:PF06955Pfam:Q8LC45Pfscan:PS51762
PhylomeDB:Q8LC45PIR:A86239PIRSF:PIRSF005604PRIDE:Q8LC45
PRO:PR:Q8LC45PROSITE:PS51762ProteinModelPortal:Q8LC45Proteomes:UP000006548
RefSeq:NP_172525.1SMR:Q8LC45STRING:3702.AT1G10550.1SUPFAM:SSF49899
TAIR:AT1G10550tair10-symbols:XETtair10-symbols:XTH33UniGene:At.42175
UniProt:Q8LC45
Coordinates (TAIR10) chr1:-:3479257..3480957
Molecular Weight (calculated) 34645.80 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.32
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIMWETAVV FCLCSLSLVS SHSRKFTTPN VTRLTDQFSK IAIENGFSRR FGAHNIQVNG SLAKLTLDKS SGAGLVSKNK YHYGFFSARL KLPAGFASGV
101: VVAFYLSNAE TYPKSHDEID IELLGRSRRD DWTIQTNVYA NGSTRTGREE KFYFWFDPTQ AFHDYTLIWN SHHTVFLVDN IPVRQFPNRG AFTSAYPSKP
201: MSLYVTVWDG SEWATKGGKY PVNYKYAPFV VSVADVELSG CSVNNGSSTG SGPCTKSGGS ISSLDPVDGQ DFATLSKNQI NAMDWARRKL MFYSYCSDKP
301: RYKVMPAECN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)