suba logo
AT4G38400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27936405 (2017): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin-like A2
Curator
Summary (TAIR10)
member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin-like A2 (EXLA2); INVOLVED IN: response to cyclopentenone, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin-like A1 (TAIR:AT3G45970.1); Has 1877 Blast hits to 1874 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1869; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKFZeggNOG:ENOG410YDTVEMBL:AF378855EMBL:AL035539
EMBL:AL161593EMBL:AY050470EMBL:CP002687EnsemblPlants:AT4G38400
EnsemblPlants:AT4G38400.1entrez:829997Gene3D:2.40.40.10Gene3D:2.60.40.760
GeneID:829997Genevisible:Q9SVE5GO:GO:0005576GO:GO:0009505
GO:GO:0009506GO:GO:0016020GO:GO:0019953Gramene:AT4G38400.1
hmmpanther:PTHR31692hmmpanther:PTHR31692:SF4HOGENOM:HOG000220794InParanoid:Q9SVE5
InterPro:IPR005795InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118
InterPro:IPR009009KEGG:ath:AT4G38400OMA:RIPCEYAPaxDb:Q9SVE5
Pfam:PF01357Pfam:PF03330Pfam:Q9SVE5Pfscan:PS50842
Pfscan:PS50843PhylomeDB:Q9SVE5PIR:T05668PRIDE:Q9SVE5
PRINTS:PR00829PRINTS:PR01225PRO:PR:Q9SVE5PROSITE:PS50842
PROSITE:PS50843ProteinModelPortal:Q9SVE5Proteomes:UP000006548RefSeq:NP_195553.1
SMR:Q9SVE5STRING:3702.AT4G38400.1SUPFAM:SSF49590SUPFAM:SSF50685
TAIR:AT4G38400tair10-symbols:ATEXLA2tair10-symbols:ATEXPL2tair10-symbols:ATHEXP BETA 2.2
tair10-symbols:EXLA2tair10-symbols:EXPL2UniGene:At.2766UniProt:Q9SVE5
Coordinates (TAIR10) chr4:-:17978675..17979665
Molecular Weight (calculated) 28644.20 Da
IEP (calculated) 8.25
GRAVY (calculated) 0.01
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MLQGFLFLLS VVLLFSSSAA ACDRCLHSSK AAYFSSASAL SSGACAYGSM ATGFFAGHIA AALPSIYKDG SGCGACFQVR CKNPTLCSSK GTTVIVTDLN
101: KTNQTDLVLS SRAFRAMAKP VVGADRDLLK QGIVDIEYRR VPCDYGNKKM NVRVEESSKN PNYLAIKLLY QGGQTEVVAI YIAQVGSSHW SYMTRSHGAV
201: WVTDKVPNGA LQFRFVVTAG YDGKMVWSQR VLPANWEAGK SYDAGVQITD IAQEGCDPCD DHIWN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)