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AT3G49220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase PCR fragment F (TAIR:AT5G53370.1); Has 3279 Blast hits to 3212 proteins in 470 species: Archae - 6; Bacteria - 866; Metazoa - 1; Fungi - 193; Plants - 2188; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G49220-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IIF6
EMBL:AF325050EMBL:AK226562EMBL:AK226672EMBL:AK229067
EMBL:AL132956EMBL:AY059834EMBL:BT008355EMBL:CP002686
EnsemblPlants:AT3G49220EnsemblPlants:AT3G49220.1entrez:824083Gene3D:1.20.140.40
Gene3D:2.160.20.10GeneID:824083Genevisible:Q9M3B0GO:GO:0004857
GO:GO:0005618GO:GO:0016021GO:GO:0030599GO:GO:0042545
GO:GO:0045330GO:GO:0045490gramene_pathway:3.1.1.11gramene_pathway:PWY-1081
hmmpanther:PTHR31707hmmpanther:PTHR31707:SF8HOGENOM:HOG000217409InParanoid:Q9M3B0
InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334
InterPro:IPR033131iPTMnet:Q9M3B0KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT3G49220OMA:MMSYIGGPaxDb:Q9M3B0Pfam:PF01095
Pfam:PF04043Pfam:Q9M3B0PhylomeDB:Q9M3B0PIR:T45827
PRIDE:Q9M3B0PRO:PR:Q9M3B0PROSITE:PS00503ProteinModelPortal:Q9M3B0
Proteomes:UP000006548RefSeq:NP_190491.1scanprosite:PS00503SMART:SM00856
SMR:Q9M3B0STRING:3702.AT3G49220.1SUPFAM:SSF101148SUPFAM:SSF51126
TAIR:AT3G49220TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelix
UniGene:At.24776UniPathway:UPA00545UniProt:Q9M3B0
Coordinates (TAIR10) chr3:+:18249840..18253647
Molecular Weight (calculated) 65310.50 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.17
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYERLGPSG ATGSVTTSTT TAPILNQVST SEQPENNNRR SKKKLVVSSI VLAISLILAA AIFAGVRSRL KLNQSVPGLA RKPSQAISKA CELTRFPELC
101: VDSLMDFPGS LAASSSKDLI HVTVNMTLHH FSHALYSSAS LSFVDMPPRA RSAYDSCVEL LDDSVDALSR ALSSVVSSSA KPQDVTTWLS AALTNHDTCT
201: EGFDGVDDGG VKDHMTAALQ NLSELVSNCL AIFSASHDGD DFAGVPIQNR RLLGVEEREE KFPRWMRPKE REILEMPVSQ IQADIIVSKD GNGTCKTISE
301: AIKKAPQNST RRIIIYVKAG RYEENNLKVG RKKINLMFVG DGKGKTVISG GKSIFDNITT FHTASFAATG AGFIARDITF ENWAGPAKHQ AVALRIGADH
401: AVIYRCNIIG YQDTLYVHSN RQFFRECDIY GTVDFIFGNA AVVLQNCSIY ARKPMDFQKN TITAQNRKDP NQNTGISIHA SRVLAASDLQ ATNGSTQTYL
501: GRPWKLFSRT VYMMSYIGGH VHTRGWLEWN TTFALDTLYY GEYLNSGPGS GLGQRVSWPG YRVINSTAEA NRFTVAEFIY GSSWLPSTGV SFLAGLSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)