AT1G76160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5 similar 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28578211..28581020 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60044.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG 101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG 201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV 301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP 401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ 501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)