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AT4G27720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF791 (InterPro:IPR008509), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G49310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSP5eggNOG:KOG4332EMBL:AF325107EMBL:AF419573
EMBL:AY056408EMBL:AY084621EMBL:BT003023EMBL:CP002687
EnsemblPlants:AT4G27720EnsemblPlants:AT4G27720.1entrez:828886GeneID:828886
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0005886
GO:GO:0015098GO:GO:0016021Gramene:AT4G27720.1hmmpanther:PTHR23516
hmmpanther:PTHR23516:SF4HOGENOM:HOG000239662InterPro:IPR008509InterPro:IPR020846
KEGG:ath:AT4G27720OMA:QHALFIRPfam:PF05631PhylomeDB:Q9C5R0
Proteomes:UP000006548RefSeq:NP_567786.1STRING:3702.AT4G27720.1SUPFAM:SSF103473
TAIR:AT4G27720TMHMM:TMhelixUniGene:At.21328UniGene:At.32073
UniProt:Q9C5R0
Coordinates (TAIR10) chr4:+:13831203..13833521
Molecular Weight (calculated) 50888.60 Da
IEP (calculated) 7.21
GRAVY (calculated) 0.51
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIFYYLVFG VLGLVVAALE LSKNNKDRIN TSSAFNSFKN NYLLVYSLMM AGDWLQGPYV YYLYSTYGFG KGDIGQLFIA GFGSSMLFGT IVGSLADKQG
101: RKRACVTYCI TYILSCITKH SPQYKVLMVG RVLGGIATSL LFSSFESWLV AEHNKRGFEQ QWLSVTFSKA VFFGNGLVAI IAGLFGNLLV DTFSLGPVAP
201: FDAAACFLTI GMAVILSSWT ENYGDPSENK DLLTQFRGAA VAIASDEKIA LLGAIQSLFE GSMYTFVFLW TPALSPNDEE IPHGFIFATF MLASMLGSSL
301: ASRLLSRSTP KVESYMQIVF LVSGAALLLP ILMTLFIAPS KVKGGGISFS GCFQLLGFCI FEACVGLFWP SIMKMRSQYI PEEARSTIMN FFRIPLNIFV
401: CVVLYNVNAF PITVMFGMCS IFLFVASLLQ RRLMMIVDKP KTNDWTPLEE RNTEEDPLNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)