AT4G27720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF791 (InterPro:IPR008509), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G49310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13831203..13833521 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50888.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.51 | ||||||||||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIFYYLVFG VLGLVVAALE LSKNNKDRIN TSSAFNSFKN NYLLVYSLMM AGDWLQGPYV YYLYSTYGFG KGDIGQLFIA GFGSSMLFGT IVGSLADKQG 101: RKRACVTYCI TYILSCITKH SPQYKVLMVG RVLGGIATSL LFSSFESWLV AEHNKRGFEQ QWLSVTFSKA VFFGNGLVAI IAGLFGNLLV DTFSLGPVAP 201: FDAAACFLTI GMAVILSSWT ENYGDPSENK DLLTQFRGAA VAIASDEKIA LLGAIQSLFE GSMYTFVFLW TPALSPNDEE IPHGFIFATF MLASMLGSSL 301: ASRLLSRSTP KVESYMQIVF LVSGAALLLP ILMTLFIAPS KVKGGGISFS GCFQLLGFCI FEACVGLFWP SIMKMRSQYI PEEARSTIMN FFRIPLNIFV 401: CVVLYNVNAF PITVMFGMCS IFLFVASLLQ RRLMMIVDKP KTNDWTPLEE RNTEEDPLNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)