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AT1G70370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26106400 (2015): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polygalacturonase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
polygalacturonase 2 (PG2); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein (TAIR:AT1G23760.1); Has 2933 Blast hits to 2085 proteins in 370 species: Archae - 9; Bacteria - 765; Metazoa - 357; Fungi - 320; Plants - 613; Viruses - 5; Other Eukaryotes - 864 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK7ReggNOG:ENOG410YDACEMBL:AC003671EMBL:AF083752
EMBL:AK226888EMBL:AY056388EMBL:BT000514EMBL:CP002684
EMBL:U63373EnsemblPlants:AT1G70370EnsemblPlants:AT1G70370.1EnsemblPlants:AT1G70370.2
entrez:843373ExpressionAtlas:P92990GeneID:843373Genevisible:P92990
GO:GO:0005618GO:GO:0048046Gramene:AT1G70370.1Gramene:AT1G70370.2
hmmpanther:PTHR31458hmmpanther:PTHR31458:SF3HOGENOM:HOG000082581InParanoid:P92990
InterPro:IPR004873KEGG:ath:AT1G70370OMA:NTFKGYAPaxDb:P92990
Pfam:P92990Pfam:PF03181Pfscan:PS51277PhylomeDB:P92990
PIR:T01485PRIDE:P92990PRO:PR:P92990PROSITE:PS51277
ProteinModelPortal:P92990Proteomes:UP000006548RefSeq:NP_001185361.1RefSeq:NP_177194.1
SMART:SM01045STRING:3702.AT1G70370.1TAIR:AT1G70370tair10-symbols:PG2
TMHMM:TMhelixUniGene:At.10202UniGene:At.73052UniGene:At.75232
UniProt:P92990UniProt:Q0WV83
Coordinates (TAIR10) chr1:-:26513003..26514998
Molecular Weight (calculated) 68063.80 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.48
Length 626 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKQFLLLQS FSFFLFNVVI VGGRTFGGGF SAEENPFTPK ASLVRYWNKE IRGQSPRSEF LISKASPLNA VDSATFSKLA AANSLPTRFP DFCSAANLFC
101: FPDLGASLEK HDDDVKFSVY DQKNFTNYGN ARAGGADSFK NYSKDGNVVT DSFRRYSRNA AGHDDKFTVY GENSNVVEEG FNSYGTFGTG GAGDFTNYQN
201: NVNNPTSRFT AYSDGGNGRS QTFKTYTHEA NAGNGQSFTS YGKNGNGVPN EFTSYGVSSN VIGSGFSNYG ESGNAANDTF TSYGSDGNVP QNNFNNYGAS
301: GNAAVDTFAN YRDKANVGDD SFSSYAKDSN SEKVNFVNYG QSFNPGSETF TGYGKGAEGS KLSFKTYTPN STFKDYAKKG VAFAKYNVST TTANTVGDGK
401: TVNKWIEPGK FFRESSLKEG TVIPMPDIKD KMPKRSFLPR SIITKLPFST SKLGEIKRIF HAVENSTMGG IITDAVTECE RPPSVGETKR CVGSAEDMID
501: FATSVLGRSV VLRTTENVAG SKEKVVIGKV NGINGGKLTK AVSCHQSLYP YLLYYCHSVP KVRVYEADLL ELNSKKKINH GIAICHMDTS SWGPSHGAFL
601: ALGSKPGRIE VCHWIFENDM NWAIAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)