AT4G37450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : arabinogalactan protein 18 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
arabinogalactan protein 18 (AGP18); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 17 (TAIR:AT2G23130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17605926..17606734 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20490.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.84 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 209 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRNFLLTVT LICIVVAGVG GQSPISSPTK SPTTPSAPTT SPTKSPAVTS PTTAPAKTPT ASASSPVESP KSPAPVSESS PPPTPVPESS PPVPAPMVSS 101: PVSSPPVPAP VADSPPAPVA APVADVPAPA PSKHKKTTKK SKKHQAAPAP APELLGPPAP PTESPGPNSD AFSPGPSADD QSGAASTRVL RNVAVGAVAT 201: AWAVLVMAF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)