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AT2G19620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : N-MYC downregulated-like 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
N-MYC downregulated-like 3 (NDL3); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 1 (TAIR:AT5G56750.1); Has 904 Blast hits to 903 proteins in 145 species: Archae - 0; Bacteria - 134; Metazoa - 564; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSPFeggNOG:KOG2931EMBL:AC005917EMBL:CP002685
EnsemblPlants:AT2G19620EnsemblPlants:AT2G19620.1entrez:816481ESTHER:arath-At2g19620
ExpressionAtlas:Q9ZUN1Gene3D:3.40.50.1820GeneID:816481Gramene:AT2G19620.1
hmmpanther:PTHR11034hmmpanther:PTHR11034:SF23HOGENOM:HOG000237602InterPro:IPR004142
InterPro:IPR029058OMA:CMGITAGPANTHER:PTHR11034Pfam:PF03096
PhylomeDB:Q9ZUN1PIR:A84579Proteomes:UP000006548RefSeq:NP_179552.1
SMR:Q9ZUN1STRING:3702.AT2G19620.1SUPFAM:SSF53474TAIR:AT2G19620
tair10-symbols:NDL3UniGene:At.39818UniGene:At.43300UniProt:Q9ZUN1
Coordinates (TAIR10) chr2:-:8486131..8488651
Molecular Weight (calculated) 38704.10 Da
IEP (calculated) 6.69
GRAVY (calculated) 0.07
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGLNNAVSL DIEEICNGGK EHHVKTCHGS VSVVVYGDQE KPALITYPDV ALNYMSCFQG LFLCPEAVSL LLHNFCIYHI SPPGHEFGAA PVCSNDPSPS
101: VEDLADQILE VLNFFSLEAV MCMGITAGAY ILSLFAIKHK ERVLGLILIS PLCKAPSWSE WFYYKVVSNL LYYYGMSGLL KDIFLQRYFS KEARGSSEVP
201: ERDVVHECRR LLGERHGSSL MRFLEAVNRR HDLTDGLKSL KCRTLIFVGD QSPFHSETLH MVTALDRKYS ALVEVQACGS MVTEEQPHAM LIPMEFFFMG
301: FGLYRPGRVS DSPRSPLSPS CISPELLSPE SLGLKLKPIK TRVPTKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)