AT3G45230.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60630.1); Has 9394 Blast hits to 3408 proteins in 532 species: Archae - 18; Bacteria - 1025; Metazoa - 764; Fungi - 595; Plants - 1828; Viruses - 505; Other Eukaryotes - 4659 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:16569123..16569650 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 17946.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.61 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||
| Length | 175 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLEFIIVAM MLSLVLVSGE ILTKSSPAPS PDLADSPLIH ASPPSKLGSH NSPAESPIEY SSPPEPETEH SPSPSPANSP SVSPPLPNDS QSPSSSASPS 101: PSPEASDVNH SDITGIEGEK LPSGSGGGMS GGKKVGVAFG AIAAVCVVGV AGFVYKKRQE NIRRSRYGYA AREIL |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)