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AT3G06740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GATA transcription factor 15
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 15 (GATA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 16 (TAIR:AT5G49300.1); Has 1479 Blast hits to 1431 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 586; Plants - 738; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
BioGrid:5194eggNOG:COG5641eggNOG:KOG1601EMBL:AC023912
EMBL:AY063926EMBL:AY084525EMBL:AY091250EMBL:CP002686
EnsemblPlants:AT3G06740EnsemblPlants:AT3G06740.1entrez:819859Gene3D:3.30.50.10
GeneID:819859Genevisible:Q8LG10GO:GO:0000977GO:GO:0001085
GO:GO:0001228GO:GO:0003682GO:GO:0003700GO:GO:0005634
GO:GO:0005667GO:GO:0006366GO:GO:0008270GO:GO:0030154
GO:GO:0045944Gramene:AT3G06740.1hmmpanther:PTHR10071hmmpanther:PTHR10071:SF203
HOGENOM:HOG000237836InParanoid:Q8LG10InterPro:IPR000679InterPro:IPR013088
KEGG:ath:AT3G06740MINT:MINT-8064813OMA:VMMQRSTPaxDb:Q8LG10
Pfam:PF00320Pfam:Q8LG10Pfscan:PS50114PhylomeDB:Q8LG10
PRIDE:Q8LG10PRO:PR:Q8LG10PROSITE:PS00344PROSITE:PS50114
ProteinModelPortal:Q8LG10Proteomes:UP000006548RefSeq:NP_566290.1scanprosite:PS00344
SMART:SM00401SMR:Q8LG10STRING:3702.AT3G06740.1SUPFAM:SSF57716
TAIR:AT3G06740tair10-symbols:GATA15UniGene:At.27143UniProt:Q8LG10
Coordinates (TAIR10) chr3:+:2126658..2127265
Molecular Weight (calculated) 16563.70 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.87
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDPTEKVID SESMESKLTS VDAIEEHSSS SSNEAISNEK KSCAICGTSK TPLWRGGPAG PKSLCNACGI RNRKKRRTLI SNRSEDKKKK SHNRNPKFGD
101: SLKQRLMELG REVMMQRSTA ENQRRNKLGE EEQAAVLLMA LSYASSVYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)