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AT4G16141.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA type zinc finger transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GATA type zinc finger transcription factor family protein; FUNCTIONS IN: sequence-specific DNA binding, zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 17 (TAIR:AT3G16870.1); Has 1652 Blast hits to 1613 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 714; Plants - 768; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AK119021EMBL:CP002687
EnsemblPlants:AT4G16141EnsemblPlants:AT4G16141.1entrez:827301Gene3D:3.30.50.10
GeneID:827301GO:GO:0000977GO:GO:0001085GO:GO:0001228
GO:GO:0003682GO:GO:0005634GO:GO:0005667GO:GO:0006366
GO:GO:0008270GO:GO:0030154GO:GO:0045944Gramene:AT4G16141.1
hmmpanther:PTHR10071hmmpanther:PTHR10071:SF203HOGENOM:HOG000237836InterPro:IPR000679
InterPro:IPR013088KEGG:ath:AT4G16141OMA:FKVPAMKPfam:PF00320
Pfscan:PS50114PhylomeDB:Q8GW81PROSITE:PS00344PROSITE:PS50114
Proteomes:UP000006548RefSeq:NP_680707.4scanprosite:PS00344SMART:SM00401
SMR:Q8GW81STRING:3702.AT4G16141.1SUPFAM:SSF57716TAIR:AT4G16141
UniGene:At.44271UniProt:Q8GW81
Coordinates (TAIR10) chr4:-:9131872..9132893
Molecular Weight (calculated) 21184.50 Da
IEP (calculated) 10.67
GRAVY (calculated) -0.81
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMTEETKTT KLESAGDSSD VDNGNCSSSG SGGDTKKTCV DCGTSRTPLW RGGPAGPKSL CNACGIKSRK KRQAALGIRQ DDIKIKSKSN NNLGLESRNV
101: KTGKGEPVNV KIAKCEPGIV KIAKGEPGNV KNKIKRDPEN SSSSNNNKKN VKRVGRFLDF GFKVPAMKRS AVEKKRLWRK LGEEERAAVL LMALSCG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)