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AT5G48760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L13 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT4G13170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0102eggNOG:KOG3204EMBL:AB012242EMBL:AY088191
EMBL:AY090359EMBL:AY122902EMBL:CP002688EMBL:Z26407
EnsemblPlants:AT5G48760EnsemblPlants:AT5G48760.1EnsemblPlants:AT5G48760.2entrez:834934
Gene3D:3.90.1180.10GeneID:834934Genevisible:Q9FKC0GO:GO:0003735
GO:GO:0006412GO:GO:0022625GO:GO:0022626Gramene:AT5G48760.1
Gramene:AT5G48760.2HAMAP:MF_01366hmmpanther:PTHR11545hmmpanther:PTHR11545:SF3
HOGENOM:HOG000225289InParanoid:Q9FKC0InterPro:IPR005755InterPro:IPR005822
InterPro:IPR023563InterPro:IPR023564KEGG:ath:AT5G48760KO:K02872
OMA:VITRCEEPANTHER:PTHR11545PANTHER:PTHR11545:SF3PaxDb:Q9FKC0
Pfam:PF00572Pfam:Q9FKC0PhylomeDB:Q9FKC0PRIDE:Q9FKC0
PRO:PR:Q9FKC0PROSITE:PS00783ProteinModelPortal:Q9FKC0Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_001078737.1RefSeq:NP_199687.1
scanprosite:PS00783SMR:Q9FKC0STRING:3702.AT5G48760.1SUPFAM:SSF52161
TAIR:AT5G48760TIGRfam:TIGR01077TIGRFAMs:TIGR01077UniGene:At.20766
UniGene:At.25519UniGene:At.72564UniProt:Q9FKC0
Coordinates (TAIR10) chr5:-:19771315..19772686
Molecular Weight (calculated) 23591.60 Da
IEP (calculated) 11.05
GRAVY (calculated) -0.38
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)