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AT2G44120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L30/L7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 1303 Blast hits to 1301 proteins in 392 species: Archae - 217; Bacteria - 1; Metazoa - 455; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).
Protein Annotations
BioGrid:4354eggNOG:COG1841eggNOG:KOG3184EMBL:AC004005
EMBL:AF446884EMBL:AY052724EMBL:AY065196EMBL:AY081474
EMBL:AY087583EMBL:BT002379EMBL:CP002685EnsemblPlants:AT2G44120
EnsemblPlants:AT2G44120.1entrez:819018ExpressionAtlas:P60039Gene3D:3.30.1390.20
GeneID:819018Genevisible:P60039GO:GO:0005840hmmpanther:PTHR11524
HOGENOM:HOG000170917InParanoid:P60039InterPro:IPR005998InterPro:IPR012988
InterPro:IPR016082InterPro:IPR018038iPTMnet:P60039KEGG:ath:AT2G44120
KO:K02937ncoils:CoilPaxDb:P60039Pfam:P60039
Pfam:PF00327Pfam:PF08079PhylomeDB:P60039PIR:T00692
PRIDE:P60039PRO:PR:P60039PROSITE:PS00634ProteinModelPortal:P60039
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_850410.1
RefSeq:NP_850411.1scanprosite:PS00634STRING:3702.AT2G44120.2SUPFAM:SSF55129
TAIR:AT2G44120TIGRfam:TIGR01310TIGRFAMs:TIGR01310UniGene:At.23643
UniGene:At.68712UniProt:P60039
Coordinates (TAIR10) chr2:-:18249227..18250402
Molecular Weight (calculated) 27941.50 Da
IEP (calculated) 10.58
GRAVY (calculated) -0.46
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESKVVVPE SVLKKIKRQE EWALAKKDEA VAAKKKSVEA RKLIFKRAEQ YAKEYAEKDN ELIRLKREAK LKGGFYVDPE AKLLFIIRIR GINAIDPKTK
101: KILQLLRLRQ IFNGVFLKVN KATVNMLRRV EPYVTYGYPN LKSVKELIYK RGYGKLNHQR IALTDNSIVD QALGKHGIIC VEDLIHEIMT VGPHFKEANN
201: FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELVRR MN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)