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AT4G18730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein L16B
Curator
Summary (TAIR10)
encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin.
Computational
Description (TAIR10)
ribosomal protein L16B (RPL16B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: lateral root morphogenesis, cell cycle, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, membrane; EXPRESSED IN: lateral root primordium, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: Ribosomal L5P family protein (TAIR:AT5G45775.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:10354BioGrid:12900BioGrid:19866eggNOG:COG0094
eggNOG:KOG0397EMBL:AB012245EMBL:AF326876EMBL:AF339697
EMBL:AF385722EMBL:AL035526EMBL:AL161549EMBL:AL353032
EMBL:AY039570EMBL:AY078021EMBL:AY085232EMBL:AY086211
EMBL:AY086300EMBL:AY129487EMBL:CP002686EMBL:CP002687
EMBL:CP002688EMBL:X81798EMBL:X81800EMBL:Z29034
EnsemblPlants:AT3G58700.1EnsemblPlants:AT4G18730EnsemblPlants:AT4G18730.1EnsemblPlants:AT5G45775.2
entrez:825039entrez:827607entrez:834617Gene3D:3.30.1440.10
GeneID:825039GeneID:827607GeneID:834617Genevisible:P42794
GO:GO:0000027GO:GO:0003735GO:GO:0005773GO:GO:0006412
GO:GO:0016020GO:GO:0019843GO:GO:0022625GO:GO:0022626
hmmpanther:PTHR11994hmmpanther:PTHR11994:SF14HOGENOM:HOG000231312InParanoid:P42794
InterPro:IPR002132InterPro:IPR020929InterPro:IPR022803InterPro:IPR031309
InterPro:IPR031310iPTMnet:P42794KEGG:ath:AT3G58700KEGG:ath:AT4G18730
KEGG:ath:AT5G45775KO:K02868OMA:HRINNTEPaxDb:P42794
Pfam:P42794Pfam:PF00281Pfam:PF00673PhylomeDB:P42794
PIR:S49033PIR:T49153PIRSF:PIRSF002161PRIDE:P42794
PRO:PR:P42794PROSITE:PS00358ProteinModelPortal:P42794Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_191429.1RefSeq:NP_567563.1
RefSeq:NP_568649.2RefSeq:NP_851137.1scanprosite:PS00358SMR:P42794
STRING:3702.AT5G45775.2SUPFAM:SSF55282TAIR:AT3G58700TAIR:AT4G18730
TAIR:AT5G45775tair10-symbols:RPL16BUniGene:At.18929UniGene:At.22889
UniProt:P42794
Coordinates (TAIR10) chr4:+:10302238..10303206
Molecular Weight (calculated) 20862.40 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.47
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)