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AT3G16870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA transcription factor 17
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 17 (GATA17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT4G16141.1); Has 1542 Blast hits to 1508 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 622; Plants - 726; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AK229178EnsemblPlants:AT3G16870
EnsemblPlants:AT3G16870.1entrez:820942ExpressionAtlas:Q0WPA1Gene3D:3.30.50.10
GeneID:820942GO:GO:0003700GO:GO:0008270GO:GO:0043565
Gramene:AT3G16870.1hmmpanther:PTHR10071hmmpanther:PTHR10071:SF203InterPro:IPR000679
InterPro:IPR013088KEGG:ath:AT3G16870OMA:DCGTIRTPaxDb:Q0WPA1
Pfam:PF00320Pfam:Q9LIB5Pfscan:PS50114PhylomeDB:Q0WPA1
PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:Q0WPA1RefSeq:NP_188312.1
scanprosite:PS00344SMART:SM00401SMR:Q0WPA1STRING:3702.AT3G16870.1
SUPFAM:SSF57716TAIR:AT3G16870tair10-symbols:GATA17UniGene:At.38827
UniProt:Q0WPA1UniProt:Q9LIB5
Coordinates (TAIR10) chr3:-:5763752..5764576
Molecular Weight (calculated) 20611.40 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.84
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)