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AT2G35550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic pentacysteine 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic pentacysteine 7 (BPC7); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 222 Blast hits to 222 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ45eggNOG:ENOG410YK0KEMBL:AC005314EMBL:AY102550
EMBL:AY116857EMBL:AY380573EMBL:BT026350EMBL:CP002685
EMBL:EU089960EnsemblPlants:AT2G35550EnsemblPlants:AT2G35550.1EnsemblPlants:AT2G35550.2
EnsemblPlants:AT2G35550.3EnsemblPlants:AT2G35550.4entrez:818120GeneID:818120
Genevisible:O82286GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR31421hmmpanther:PTHR31421:SF4HOGENOM:HOG000241671
InParanoid:O82286InterPro:IPR010409KEGG:ath:AT2G35550OMA:CCTISIS
PANTHER:PTHR31421PaxDb:O82286Pfam:O82286Pfam:PF06217
PIR:A84770PRO:PR:O82286Proteomes:UP000006548RefSeq:NP_001031488.1
RefSeq:NP_001078009.1RefSeq:NP_181098.2RefSeq:NP_850249.1SMART:SM01226
TAIR:AT2G35550tair10-symbols:ATBPC7tair10-symbols:BBRtair10-symbols:BPC7
UniGene:At.37658UniProt:O82286
Coordinates (TAIR10) chr2:+:14929526..14930618
Molecular Weight (calculated) 29893.80 Da
IEP (calculated) 10.33
GRAVY (calculated) -0.53
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLDSSFVNS SGFADFQSNN LERSNLFLYE LQREGVIFPL KLAIKMNSFP AQNLMLSATN ANKDSGLRTS NAHWLHSCIA VPKTTGIDLS QEPPAEGVMV
101: PQSHLFPPPI RDSRNDTETV KQKSVNQSPS KALKPKPQRK KRSVSNKSKK TPSIPETKRE KKNLDINIDI SSFDTSGVPP PVCSCTGVSR VCYKWGMGGW
201: QSSCCTISIS TYPLPMSTTR PGARLAGRKM SNGAYVKLLA RLADEGYDLS HPLDLKNHWA RHGTNKFVTI K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)