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AT2G17300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35320.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVWHeggNOG:ENOG41105HREMBL:BT011761EMBL:BT012383
EMBL:CP002685EnsemblPlants:AT2G17300EnsemblPlants:AT2G17300.1entrez:816236
GeneID:816236Gramene:AT2G17300.1hmmpanther:PTHR35714HOGENOM:HOG000239414
KEGG:ath:AT2G17300OMA:KEWWEWSPhylomeDB:Q6NLF1PIR:E84550
Proteomes:UP000006548RefSeq:NP_179322.1TAIR:AT2G17300UniGene:At.40164
UniProt:Q6NLF1
Coordinates (TAIR10) chr2:-:7522465..7522884
Molecular Weight (calculated) 15880.10 Da
IEP (calculated) 11.42
GRAVY (calculated) -0.57
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSIMKTLQ IRKPTSLPIS STTTDEPGLL RRRLSSLSLN LSRNQPSTVS RSKSVSDMGE QGGSSVKEWW EWSWSWILLK KLPIFFTDLE VNKNETKSSL
101: GNQQRGSFIH VFFKLRSEIR RLLRPSSDSL PLSCKHGQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)