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AT3G52920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF662)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF662) ; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.1); Has 2850 Blast hits to 2486 proteins in 375 species: Archae - 84; Bacteria - 284; Metazoa - 1164; Fungi - 182; Plants - 322; Viruses - 9; Other Eukaryotes - 805 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXXZeggNOG:ENOG410ZCAREMBL:AY088252EMBL:CP002686
EnsemblPlants:AT3G52920EnsemblPlants:AT3G52920.1entrez:824458ExpressionAtlas:Q8L9S7
GeneID:824458GO:GO:0005886Gramene:AT3G52920.1hmmpanther:PTHR21470
HOGENOM:HOG000239121IntAct:Q8L9S7InterPro:IPR007033KEGG:ath:AT3G52920
ncoils:CoilOMA:ETMADPMPfam:PF04949PhylomeDB:Q8L9S7
Proteomes:UP000006548RefSeq:NP_566974.1STRING:3702.AT3G52920.1TAIR:AT3G52920
UniGene:At.35247UniProt:Q8L9S7
Coordinates (TAIR10) chr3:+:19624601..19625981
Molecular Weight (calculated) 20985.20 Da
IEP (calculated) 7.08
GRAVY (calculated) -1.04
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME MGQLVGESEK LRLKKLDELS RSIDTESESI SQDKTIPIKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)