AT5G37790.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.791 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:15008433..15011025 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60220.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||
| Length | 552 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFYEGASVH PRTPENKNTV NIPILTSSSS SSDLDGDNND NNNNTGIKTL LKRMIFDLGF ACFLPPLSST ENSGNNNGGG TSGGGGGGGG GGENNKAWLL 101: AETAPENMNP DPHSVHSSFR FSLCSQIELE KMKGEEPSLS ASSSCRNLSV SGGSTTVLMV NLENGVKETT GNATDDLRWT RARSLEKSIS PVANTLVRFS 201: YGEIVAATRN FSKGRVLGRG ACSYVFRGKI GMWRTALAIK RLDKEDKESP KSFCRELMIA SSLHSSNIVP LLGFCIDPEE GLFLVYKYVS GGSLEHYLHD 301: KKKKKGVKAA FGLPWSARYK VALGIADAIA YLHNGTEQCV VHRDIKPSNI LLSSKKIPKL CDFGLATWTA APSVPFLCKT VKGTFGYLAP EYFQHGKISD 401: KTDVYAFGVV LLELITGRKP IEARRASGQE NLVVWAKPLL DRGIEAIVEL LDPRLKCTRK NSVQMERMIR AAAACVINEE SRRPGMEEIV SILKGEEGVE 501: PETHSSRKTT NISGMIDSYT QLQQTKSEMK CHLDLAMLGV TEFEDDDHVY GR |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)