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AT1G70550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 775 Blast hits to 727 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHECeggNOG:ENOG4111S54EMBL:CP002684EnsemblPlants:AT1G70550
EnsemblPlants:AT1G70550.1entrez:843392ExpressionAtlas:F4I5H4GeneID:843392
Gramene:AT1G70550.1hmmpanther:PTHR31589hmmpanther:PTHR31589:SF19InParanoid:F4I5H4
InterPro:IPR004314InterPro:IPR025521KEGG:ath:AT1G70550OMA:CLASAKH
PaxDb:F4I5H4Pfam:PF03080Pfam:PF14365PhylomeDB:F4I5H4
Proteomes:UP000006548RefSeq:NP_177212.2TAIR:AT1G70550UniGene:At.43018
UniProt:F4I5H4
Coordinates (TAIR10) chr1:+:26597510..26599888
Molecular Weight (calculated) 52276.50 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.51
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MCLIGLLGDV SVTSRRRTTI QNRIKCCLFD HSRRKQQDSR CFHHSSQQVS FKSDPMFSSS FLRLILLLCL VSSSFSSTTS SSNSTAADQT LRPQEELQKL
101: TLIRQELDKI NKPAVKTIQS SDGDKIDCVS THQQPAFDHP LLQGQKPLDP PEIPKGYSED DGSYENSQLW SLSGESCPEG TIPIRRTTEQ DMLRASSVQR
201: FGRKIRRVKR DSTNNGHEHA VGYVTGRQYY GAKASINVWS PRVTSQYEFS LSQIWVIAGS FTHDLNTIEA GWQISPELYG DTYPRFFTYW TSDAYRTTGC
301: YNLLCSGFVQ TNRRIAIGAA ISPRSSYKGG QFDISLLIWK DPKHGHWWLQ FGSGALVGYW PAFLFTHLKQ HGSMVQFGGE IVNNRPGGSH TTTQMGSGHF
401: AGEGFGKASY FRNLQIVDWD NTLIPASNLK ILADHPNCYD IRGGTNRVWG NYFYYGGPGK NPRCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)