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AT4G32880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox gene 8
Curator
Summary (TAIR10)
member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.
Computational
Description (TAIR10)
homeobox gene 8 (HB-8); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT1G52150.1); Has 3304 Blast hits to 3224 proteins in 267 species: Archae - 0; Bacteria - 6; Metazoa - 860; Fungi - 101; Plants - 2302; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFI0eggNOG:ENOG410XQ3REMBL:AJ441292EMBL:AL161582
EMBL:AY099631EMBL:BT008798EMBL:CP002687EMBL:Z50851
EnsemblPlants:AT4G32880EnsemblPlants:AT4G32880.1entrez:829424Gene3D:1.10.10.60
Gene3D:3.30.530.20GeneID:829424Genevisible:Q39123GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0008284GO:GO:0008289
GO:GO:0009733GO:GO:0010014GO:GO:0010067GO:GO:0010072
GO:GO:0010089GO:GO:0030154GO:GO:0043565GO:GO:0045597
Gramene:AT4G32880.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF207HOGENOM:HOG000272677
InParanoid:Q39123IntAct:Q39123InterPro:IPR001356InterPro:IPR002913
InterPro:IPR009057InterPro:IPR013978InterPro:IPR023393iPTMnet:Q39123
KEGG:ath:AT4G32880KO:K09338ncoils:CoilOMA:CMDGGIC
PaxDb:Q39123Pfam:PF00046Pfam:PF01852Pfam:PF08670
Pfam:Q39123Pfscan:PS50071Pfscan:PS50848PhylomeDB:Q39123
PIR:T10695PRIDE:Q39123PRO:PR:Q39123PROSITE:PS50071
PROSITE:PS50848ProteinModelPortal:Q39123Proteomes:UP000006548RefSeq:NP_195014.1
SMART:SM00234SMART:SM00389STRING:3702.AT4G32880.1SUPFAM:SSF46689
SUPFAM:SSF55961TAIR:AT4G32880tair10-symbols:ATHB-8tair10-symbols:ATHB8
tair10-symbols:HB-8UniGene:At.31628UniProt:Q39123
Coordinates (TAIR10) chr4:-:15863587..15867822
Molecular Weight (calculated) 92001.50 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.19
Length 833 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGGSNNSHN MDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NQGNLATTDT SCESVVTSGQ HHLTPQHQPR DASPAGLLSI ADETLTEFIS KATGTAVEWV QMPGMKPGPD SIGIVAISHG
201: CTGIAARACG LVGLDPTRVA EILKDKPCWL RDCRSLDIVN VLSTANGGTL ELIYMQLYAP TTLAPARDFW MLRYTSVMED GSLVICERSL NNTQNGPSMP
301: PSPHFVRAEI LPSGYLIRPC EGGGSILHIV DHFDLEPWSV PEVLRSLYES STLLAQRTTM AALRYLRQIS QEISQPNVTG WGRRPAALRA LSQRLSKGFN
401: EAVNGFSDEG WSILESDGID DVTLLVNSSP TKMMMTSSLP FANGYTSMPS AVLCAKASML LQNVPPSILL RFLREHRQEW ADNSIDAYSA AAIKAGPCSL
501: PIPRPGSFGG QVILPLAHTI ENEEFMEVIK LESLGHYQED MMMPADIFLL QMCSGVDENA VESCAELIFA PIDASFSDDA PIIPSGFRII PLDSKSEGLS
601: PNRTLDLASA LDVGSRTAGD SCGSRGNSKS VMTIAFQLAF EMHMQENVAS MARQYVRSVI ASVQRVALAL SPSSHQLSGL RPPPASPEAH TLARWISHSY
701: RCYLGVDLLK PHGTDLLKSL WHHPDAVMCC SLKALSPVFT FANQAGLDML ETTLVALQDI TLDKIFDNNN GKKTLSSEFP QIMQQGFMCM DGGICMSSMG
801: RAVTYEKAVG WKVLNDDEDP HCICFMFLNW SFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)