AT2G21050.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : like AUXIN RESISTANT 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes LAX2 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
like AUXIN RESISTANT 2 (LAX2); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUX1 3 (TAIR:AT1G77690.1); Has 1017 Blast hits to 1012 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 224; Plants - 668; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:9034289..9036439 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54705.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 483 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MENGEKAAET VVVGNYVEME KDGKALDIKS KLSDMFWHGG SAYDAWFSCA SNQVAQVLLT LPYSFSQLGM LSGILFQLFY GILGSWTAYL ISILYVEYRT 101: RKEREKVNFR NHVIQWFEVL DGLLGKHWRN VGLAFNCTFL LFGSVIQLIA CASNIYYIND NLDKRTWTYI FGACCATTVF IPSFHNYRIW SFLGLLMTTY 201: TAWYLTIASI LHGQVEGVKH SGPSKLVLYF TGATNILYTF GGHAVTVEIM HAMWKPQKFK SIYLFATLYV LTLTLPSASA VYWAFGDLLL NHSNAFALLP 301: KNLYRDFAVV LMLIHQFITF GFACTPLYFV WEKLIGMHEC RSMCKRAAAR LPVVIPIWFL AIIFPFFGPI NSTVGSLLVS FTVYIIPALA HIFTFRSSAA 401: RENAVEQPPR FLGRWTGAFT INAFIVVWVF IVGFGFGGWA SMINFVHQID TFGLFTKCYQ CPPPVMVSPP PISHPHFNHT HGL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)