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AT1G23340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G70550.1); Has 778 Blast hits to 728 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 755; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHECeggNOG:ENOG4111S54EMBL:AK117834EMBL:BT005346
EMBL:CP002684EnsemblPlants:AT1G23340EnsemblPlants:AT1G23340.1EnsemblPlants:AT1G23340.2
entrez:838943GeneID:838943Gramene:AT1G23340.1Gramene:AT1G23340.2
hmmpanther:PTHR31589hmmpanther:PTHR31589:SF19HOGENOM:HOG000237949InterPro:IPR004314
InterPro:IPR025521KEGG:ath:AT1G23340OMA:ENESHENPfam:PF03080
Pfam:PF14365PhylomeDB:Q8GY67Proteomes:UP000006548RefSeq:NP_173748.2
RefSeq:NP_973893.1TAIR:AT1G23340UniGene:At.41555UniProt:Q8GY67
Coordinates (TAIR10) chr1:-:8284158..8286528
Molecular Weight (calculated) 45863.10 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.42
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSSCLFF TFILLLSLFS SYASPSNSTS ETVPLRPQRE IQKMKLIRKQ LQKINKPAIK TIHSSDGDTI DCVPSHHQPA FDHPLLQGQR PMDPPEMPIG
101: YSQENESHEN FQLWSLYGES CPEGTIPIRR TTEQDMLRAN SVRRFGRKIR RVRRDSSSNG HEHAVGYVSG SQYYGAKASI NVWTPRVISQ YEFSLSQIWI
201: IAGSFAGDLN TIEAGWQISP ELYGDTNPRF FTYWTSDAYQ ATGCYNLLCS GFVQTNNRIA IGAAISPVSS YKGGQFDISL LIWKDPKHGH WWLQFGSGTL
301: VGYWPVSLFT HLREHGNMVQ FGGEIVNTRP GGSHTSTQMG SGHFAGEGFG KASYFRNLQM VDWDNTLIPI SNLKVLADHP NCYDIRGGVN RVWGNFFYYG
401: GPGKNSKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)