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AT1G68810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix 32 (TAIR:AT3G25710.1); Has 3080 Blast hits to 3073 proteins in 197 species: Archae - 0; Bacteria - 9; Metazoa - 353; Fungi - 47; Plants - 2657; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:28434eggNOG:ENOG410IE0VeggNOG:ENOG410YEFCEMBL:AC011665
EMBL:AC011914EMBL:AY072161EMBL:AY122983EMBL:CP002684
EnsemblPlants:AT1G68810EnsemblPlants:AT1G68810.1entrez:843213Gene3D:4.10.280.10
GeneID:843213Genevisible:Q9S7Y1GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT1G68810.1
hmmpanther:PTHR12565hmmpanther:PTHR12565:SF77HOGENOM:HOG000243133InParanoid:Q9S7Y1
InterPro:IPR011598KEGG:ath:AT1G68810ncoils:CoilOMA:CIGTIEE
PaxDb:Q9S7Y1Pfam:PF00010Pfam:Q9S7Y1Pfscan:PS50888
PhylomeDB:Q9S7Y1PIR:H96712PRIDE:Q9S7Y1PRO:PR:Q9S7Y1
PROSITE:PS50888ProteinModelPortal:Q9S7Y1Proteomes:UP000006548RefSeq:NP_564944.1
SMART:SM00353SMR:Q9S7Y1STRING:3702.AT1G68810.1SUPFAM:SSF47459
TAIR:AT1G68810UniGene:At.46879UniProt:Q9S7Y1
Coordinates (TAIR10) chr1:+:25861289..25862882
Molecular Weight (calculated) 40827.50 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.65
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)