AT2G31280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : conserved peptide upstream open reading frame 7 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
conserved peptide upstream open reading frame 7 (CPUORF7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G06150.2); Has 440 Blast hits to 368 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:13339678..13343424 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79813.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.84 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 720 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSTSQEILK SFCFNTDWDY AVFWQLNHRG SRMVLTLEDA YYDHHGTNMH GAHDPLGLAV AKMSYHVYSL GEGIVGQVAV SGEHQWVFPE NYNNCNSAFE 101: FHNVWESQIS AGIKTILVVA VGPCGVVQLG SLCKVNEDVN FVNHIRHLFL ALRDPLADHA ANLRQCNMNN SLCLPKMPSE GLHAEAFPDC SGEVDKAMDV 201: EESNILTQYK TRRSDSMPYN TPSSCLVMEK AAQVVGGREV VQGSTCGSYS GVTFGFPVDL VGAKHENQVG TNIIRDAPHV GMTSGCKDSR DLDPNLHLYM 301: KNHVLNDTST SALAIEAERL ITSQSYPRLD STFQATSRTD KESSYHNEVF QLSENQGNKY IKETERMLGR NCESSQFDAL ISSGYTFAGS ELLEALGSAF 401: KQTNTGQEEL LKSEHGSTMR PTDDMSHSQL TFDPGPENLL DAVVANVCQR DGNARDDMMS SRSVQSLLTN MELAEPSGQK KHNIVNPINS AMNQPPMAEV 501: DTQQNSSDIC GAFSSIGFSS TYPSSSSDQF QTSLDIPKKN KKRAKPGESS RPRPRDRQLI QDRIKELREL VPNGSKCSID SLLERTIKHM LFLQNVTKHA 601: EKLSKSANEK MQQKETGMQG SSCAVEVGGH LQVSSIIVEN LNKQGMVLIE MLCEECGHFL EIANVIRSLD LVILRGFTET QGEKTWICFV TESQNSKVMQ 701: RMDILWSLVQ IFQPKANEKG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)