AT5G64340.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : sequence-specific DNA binding transcription factors;transcription regulators | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a bHLH(basic helix-loop-helix)-type transcription factor SAC51 [suppressor of acaulis 51]. Upregulation of SAC51 reverses the dwarf phenotype caused by a loss-of-function mutation in ACL5 (Arabidopsis thaliana ACAULIS 5) gene, suggesting that activation of SAC51 may lead to the expression of a subset of genes required for stem elongation. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUPPRESSOR OF ACAULIS 51 (SAC51); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT5G09460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:25730890..25731936 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38703.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.11 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 348 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPLDKRQRDL PLGLSPQACF KDIVGRSVLP RIPLPELGKL YAAKLQARCL QPPPFQSLLC SHDKESYGKR FSRSDMRSWC AAATTTTTPL GALESSQKRL 101: LIFDQSGDQT RLLQCPFPLR FPSHAAAEPV KLSELQGIEK AFKEDGEEFH KSDGTESEMH EDTEEINALL YSDDDYDDDC ESDDEVMSTG HSPYPNEGVC 201: NKRELEEIDG PCKRQKLLDK VNNISDLSSL VGTESSTQLN GSSFLKDKKL PESKTISTKE DTGSGLSNEQ SKKDKIRTAL KILESVVPGA KGNEALLLLD 301: EAIDYLKLLK RDLISTEVKN QSSTTHKSPI LLLKETTWGT RNLQTDKA |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)