AT1G73850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.638 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1666) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT3G20260.1); Has 1252 Blast hits to 1091 proteins in 184 species: Archae - 4; Bacteria - 49; Metazoa - 367; Fungi - 151; Plants - 117; Viruses - 41; Other Eukaryotes - 523 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27767375..27770386 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73593.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.57 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||
| Length | 635 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQCYTNEEAL ASLFINVSTS FFLLLILLYS AVSLLIKLLH FIGGYPLLQR NEDEYDSAAW YSEEEEEEEE EGEELKMSCN SSYHVISRDP NPDLIADIAD 101: DGESLVFYNN ISQGGVNNQH TKEFNNVYQT HEHEEEEEDD QDSNTSSTEE HFSSANVSPY RSESSIEEED DGVEDLPDDR YDDDDEDEEV GGVSRYDVVE 201: DLVRKQPNTT STRGPSRFQS GLVFNDKSYN AREFVSNGGI KNDVDEIQPS SGFDMREIKA EELEEEEEEE RGQIFGESCT NGSTSKSSSE WRNSVKTDDP 301: FSTSSRRSCP KWESYTVFQK YDEEMTFLTR ISAQKLHEAE SLKSIMVEPR SISERIVHKL SSNGHKKKQK QYPGSNGSRP NPYVELESAY VAQICLTWEA 401: LSWNYKNFER KRSTTQRSFN DVGCPAGIAD QFRTFHILLQ RYVENEPYEH GRRPEIYARM RTLAPKLLLV PEYQDYEEEE EKEDENEEGF RSRISSASFL 501: MIMEECIRTF MNFLQADKEK PCQKIIKAFF GRSKRGPVDP TLVHLMKKVN TKKKTKLKEM RRGGKYMRKK KMSIEEEMEI LMGLIDLKVV SRVLRMNEMN 601: EENLHWCEEK MSKVKIIQGG KVLQRDSTPL FFPPH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)