AT3G14780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Transposase, Ptta/En/Spm, plant (InterPro:IPR004252); BEST Arabidopsis thaliana protein match is: glucan synthase-like 4 (TAIR:AT3G14570.2); Has 315 Blast hits to 313 proteins in 50 species: Archae - 2; Bacteria - 16; Metazoa - 11; Fungi - 7; Plants - 181; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4961897..4963465 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40799.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.69 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||
| Length | 347 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSNEIAPVD PTDVFLDMDP ILPEDSPATS LFTRPLALKE QYVWEPYDSE KLPETLASGI QRFLRVANLV ESDDPRVAYL CRFYTFEEAH RIDSRSNGRG 101: VRQFKNSLLR RLEKDDEFTI RRRKEINDHK ELKRVYHAYN EYIIRHGASF NLDNSQQEKL INARSIASVL YEILRKIESS MGRASTPESI QLNRDEEIGE 201: LLDMDTSMEE TNKINSDETF VDQKAELVVE KSKVLEDERL TQMFQGDHQY LTQDEKDDIY KEEVQIKKDK RFAYGSMKAV PSLFYEDKYL ETQEKLNKLE 301: KKIEEMELKL KDVDFWTNMM QNMFPDQVPP SMRANQTDNN KNDKLSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)