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AT3G52490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57710.1); Has 7668 Blast hits to 7397 proteins in 2358 species: Archae - 25; Bacteria - 6450; Metazoa - 2; Fungi - 186; Plants - 346; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0542eggNOG:KOG1051EMBL:AL050300EMBL:BT011695
EMBL:CP002686EnsemblPlants:AT3G52490EnsemblPlants:AT3G52490.1entrez:824414
Gene3D:1.10.1780.10Gene3D:3.40.50.300GeneID:824414GO:GO:0006351
GO:GO:0006355GO:GO:0019538Gramene:AT3G52490.1hmmpanther:PTHR11638
hmmpanther:PTHR11638:SF69HOGENOM:HOG000240791InterPro:IPR004176InterPro:IPR027417
KEGG:ath:AT3G52490OMA:FREMPREPfam:PF02861PhylomeDB:Q9SVD0
PIR:T08450Proteomes:UP000006548RefSeq:NP_190817.1STRING:3702.AT3G52490.1
SUPFAM:SSF52540SUPFAM:SSF81923TAIR:AT3G52490UniGene:At.43056
UniProt:Q9SVD0
Coordinates (TAIR10) chr3:-:19455850..19458721
Molecular Weight (calculated) 89947.70 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.33
Length 815 amino acids
Sequence (TAIR10)
(BLAST)
001: MRAGGCTVEQ ALTADAANVV KQAMGLARRR GHAQVTPLHV ASTMLSAPTG LLRTACLQSH THPLQCRALE LCFNVALNRL PTSTGSPMLG VPTSPFPSIS
101: NALGAAFKRA QAHQRRGSIE SQQQPILAVK IEVEQLIISI LDDPSVSRVM REAGFSSPQV KTKVEQAVSL EICSKTTSSS KPKEGKLLTP VRNEDVMNVI
201: NNLVDKKRRN FVIVGECLAT IDGVVKTVME KVDKKDVPEV LKDVKFITLS FSSFGQPSRA DVERKLEELE TLVKSCVGKG VILNLGDLNW FVESRTRGSS
301: LYNNNDSYCV VEHMIMEIGK LACGLVMGDH GRFWLMGLAT SQTYVRCKSG QPSLESLWCL TTLTIPATSN SLRLSLVSES ELEVKKSENV SLQLQQSSDQ
401: LSFCEECSVK FESEARFLKS SNSNVTTVAL PAWLQQYKKE NQNSHTDSDS IKELVVKWNS ICDSIHKRPS LKTLTLSSPT SSFSGSTQPS ISTLHHLQTN
501: GDWPVIETNT HRHHSVVHET SHLRLFIPEH DSEQKTELVC SNPNSTMNSE ASSSDAMELE HASSRFKEMN AENLATLCAA LESKVPWQKD LVPELAKTVL
601: KCRSGSSTRK INGNEDKKED TWMFFQGLDV DAKEKIAREL AKLVFGSQDS FVSICLSSFS STRSDSAEDL RNKRLRDEQS LSYIERFSEA VSLDPNRVIL
701: VEDIEQADYL SQVGFKRAVE RGRVCNSSGE EASLKDAIVI LSCERFRSRS RACSPPSNQK SDGSDQPEDK NVATCVALDL NLSIDSAYVC EEESCDEIGL
801: LEAVDARFHF KCSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)