AT3G52490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57710.1); Has 7668 Blast hits to 7397 proteins in 2358 species: Archae - 25; Bacteria - 6450; Metazoa - 2; Fungi - 186; Plants - 346; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19455850..19458721 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89947.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.55 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 815 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRAGGCTVEQ ALTADAANVV KQAMGLARRR GHAQVTPLHV ASTMLSAPTG LLRTACLQSH THPLQCRALE LCFNVALNRL PTSTGSPMLG VPTSPFPSIS 101: NALGAAFKRA QAHQRRGSIE SQQQPILAVK IEVEQLIISI LDDPSVSRVM REAGFSSPQV KTKVEQAVSL EICSKTTSSS KPKEGKLLTP VRNEDVMNVI 201: NNLVDKKRRN FVIVGECLAT IDGVVKTVME KVDKKDVPEV LKDVKFITLS FSSFGQPSRA DVERKLEELE TLVKSCVGKG VILNLGDLNW FVESRTRGSS 301: LYNNNDSYCV VEHMIMEIGK LACGLVMGDH GRFWLMGLAT SQTYVRCKSG QPSLESLWCL TTLTIPATSN SLRLSLVSES ELEVKKSENV SLQLQQSSDQ 401: LSFCEECSVK FESEARFLKS SNSNVTTVAL PAWLQQYKKE NQNSHTDSDS IKELVVKWNS ICDSIHKRPS LKTLTLSSPT SSFSGSTQPS ISTLHHLQTN 501: GDWPVIETNT HRHHSVVHET SHLRLFIPEH DSEQKTELVC SNPNSTMNSE ASSSDAMELE HASSRFKEMN AENLATLCAA LESKVPWQKD LVPELAKTVL 601: KCRSGSSTRK INGNEDKKED TWMFFQGLDV DAKEKIAREL AKLVFGSQDS FVSICLSSFS STRSDSAEDL RNKRLRDEQS LSYIERFSEA VSLDPNRVIL 701: VEDIEQADYL SQVGFKRAVE RGRVCNSSGE EASLKDAIVI LSCERFRSRS RACSPPSNQK SDGSDQPEDK NVATCVALDL NLSIDSAYVC EEESCDEIGL 801: LEAVDARFHF KCSST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)