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AT2G41130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast envelope; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56770.1); Has 912 Blast hits to 912 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 26; Plants - 873; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:4049eggNOG:ENOG410XRJIeggNOG:KOG3561EMBL:AC004261
EMBL:AK119059EMBL:AY074639EMBL:CP002685EnsemblPlants:AT2G41130
EnsemblPlants:AT2G41130.1entrez:818712Gene3D:4.10.280.10GeneID:818712
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009941GO:GO:0042538Gramene:AT2G41130.1
hmmpanther:PTHR12565hmmpanther:PTHR12565:SF158HOGENOM:HOG000006083InParanoid:O80674
InterPro:IPR011598KEGG:ath:AT2G41130ncoils:CoilOMA:GETMAQD
PaxDb:O80674Pfam:O80674Pfam:PF00010Pfscan:PS50888
PhylomeDB:O80674PIR:T02106PRIDE:O80674PRO:PR:O80674
PROSITE:PS50888ProteinModelPortal:O80674Proteomes:UP000006548RefSeq:NP_181646.1
SMART:SM00353SMR:O80674STRING:3702.AT2G41130.1SUPFAM:SSF47459
TAIR:AT2G41130UniGene:At.37024UniProt:O80674
Coordinates (TAIR10) chr2:+:17143360..17144686
Molecular Weight (calculated) 27979.50 Da
IEP (calculated) 7.92
GRAVY (calculated) -0.42
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)