AT5G57130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Clp amino terminal domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Clp amino terminal domain-containing protein; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G29920.1); Has 283 Blast hits to 240 proteins in 33 species: Archae - 2; Bacteria - 10; Metazoa - 3; Fungi - 0; Plants - 262; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23145291..23149395 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115225.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||
| Length | 1028 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRTGGYTIQQ TLTTEAASVL KHSLTLARRR GHAQVTPLHV AATLLSSRTS LLRRACIKSH PGFSTNYQFA PSRLQHHHHH NQNHPLQCRA LELCFNVALN 0101: RLPTVPGPMF HGQPSLANAL VAALKRAQAH QRRGCIEQQQ QTQTHPQTQQ TQLLAVKVEL EQLVISILDD PSVSRVMREA GFNSTAVKSC VEDCSVSSVF 0201: YGGSAVGVFS SPNSPDQQQQ HHNSINRLHH YQNPKDFNFI NPNFPLWQTH FLNQSPDQNP LLLSSSASHH HQQQRLREID LKLVVDVLMR KKTKKKNPVI 0301: VGDSISFTEG FVSELMAKLE RGEIDQTGEL KQTHFVKFHF SPMASKFMRR EDVELNIKEL RKKVLSLTTS GKNAIIFTGD LKWTVKEITN NNSGGINEIS 0401: SSYSPLDHLV EEIGKLITEC NDDGDDDDCK TRKVWVMGTA SFQTYMRCQM RQPSLETLWA LHPVSVPSSA NLGLSLHATS GHEARNMSTV NATKSLSGYD 0501: KAEEEETISH VLSCCPECVT SFDREAKSLK ANQDKLLPSW LQSHDADSSS QKDELMGLKR KWNRFCETLH NQTGQLSMMG NYPYGLPYGS SHESSKSTSL 0601: IDSLGLKPNQ RATNSIAKFR RQNSCTIEFD LGGNEHEKGE SINEAEDDKG NETVTLDLGR SLFRSDSVTD TRLKLSALVK ALEESIPRQT VTMRLIAESL 0701: MDCVSKKKDS WIIIEGRDTT AKRRVARTVS ESVFGSFESL VHIDLKKKGN ESKASPATLL AYELKNPEKV VFLIEDIDLA DSRFLKLLAD RFEDKRRIKT 0801: GIDHRQAIFI LTKEDSRNVR NRDSVLQIGL EITAQSPGKK RKPESDLSIE NGFWMKKEVC SRQSSFNSSY LDLNIKAEDE EVEGEISPIS SDLTGEEETE 0901: FSSSSNFLNR IQNRFVLNRS CEPGIEKGMI TAAFREIFPE REEGGGVRFS VEDKLVEELY GIQNGAFERW LKEVFQTGLL TVKKGGKKDT GVIRMVFGGI 1001: VDNKGYGGGV GGYMATFLPN KVQVSKFE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)