AT4G29920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.893 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp amino terminal domain-containing protein (TAIR:AT5G57130.1); Has 2205 Blast hits to 2155 proteins in 769 species: Archae - 7; Bacteria - 1557; Metazoa - 28; Fungi - 31; Plants - 337; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14632653..14635885 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113791.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1017 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRTGAYTVHQ TLTPEAASVL KQSLTLARRR GHSQVTPLHV ASTLLTSSRS NLFRRACLKS NPFTALGRQM AHPSLHCRAL ELCFNVSLNR LPTNPNPLFQ 0101: TQPSLSNALV AALKRAQAHQ RRGCVEQQQS QQNQPFLAVK VELEQLVVSI LDDPSVSRVM REAGLSSVSV KSNIEDDSSV VSPVFYGSSS SVGVFSSPCS 0201: PSSSENNQGG GTLSPNPSKI WHAHLTNHHS FEQNPFFHFP KGKTFTPDQA FPVREDANPV IEVLLGKKNN KKRNTVIVGD SVSLTEGVVA KLMGRIERGE 0301: VPDDLKQTHF IKFQFSQVGL NFMKKEDIEG QVRELKRKID SFTSWGGKGV IVCLGDLDWA VWGGGNSASS SNYSAADHLV EEIGRLVYDY SNTGAKVWLL 0401: GTASYQTYMR CQMKQPPLDV HWALQAVSIP SGGLSLTLHA SSSEMASQVM EMKPFRVKEE EEGAREEEEE DKLNFCGECA FNYEKEAKAF ISAQHKILPP 0501: WLQPHGDNNN INQKDELSGL RKKWNRFCQA LHHKKPSMTA WRAEQSSSVL PGSLMDSSLK QNSRASSSVA KFRRQNSCTI EFSFGSNRQE GLKKTDELSL 0601: DGFKSNNDEG VKTKITLALG HSPFPSDSEN SEEEEPEKAI KMSKLLEKLH ENIPWQKDVL PSIVEAMEES VKRSKRKDAW MLVSGNDVTA KRRLAITLTT 0701: SLFGSHENML KINLRTSKAS EACEELKNAL KKKEEVVILI ERVDLADAQF MNILVDRFEA GDLDGFQGKK SQIIFLLTRE DDECVENEHF VIPMVLNCNK 0801: SGSGLVNNKR KPEYDAAPTM IKKKNPRIEE DDDESNVACD ISNIKKEFSR QLKFESNALD LNLRVDADED EEEEAKPATE ISSGFEERFL DSIQNRFDFT 0901: VLSDEDITKF FVTKIKDSCE EILGQREERF GFTVDAELIE KFYKGCGFFA NGLFEEWVKE VFQRGLVTVK NGGKEGISVI NLCLGGIDMI DQGEVYEEEE 1001: GFMGTCLPNR IHVSFVD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)