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AT2G37590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA binding with one finger 2.4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA binding with one finger 2.4 (DOF2.4); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBF-binding protein 3 (TAIR:AT3G55370.2); Has 1447 Blast hits to 1391 proteins in 103 species: Archae - 4; Bacteria - 20; Metazoa - 104; Fungi - 10; Plants - 1085; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYDYeggNOG:ENOG410YIDBEMBL:AC004684EMBL:BT030014
EMBL:CP002685EnsemblPlants:AT2G37590EnsemblPlants:AT2G37590.1entrez:818336
ExpressionAtlas:O80928GeneID:818336Genevisible:O80928GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0044212
GO:GO:0046872Gramene:AT2G37590.1hmmpanther:PTHR31992hmmpanther:PTHR31992:SF26
HOGENOM:HOG000239956InParanoid:O80928InterPro:IPR003851KEGG:ath:AT2G37590
OMA:DLRSIHMPaxDb:O80928Pfam:O80928Pfam:PF02701
Pfscan:PS50884PhylomeDB:O80928PIR:T02525PRIDE:O80928
PRO:PR:O80928ProDom:PD007478PROSITE:PS01361PROSITE:PS50884
ProteinModelPortal:O80928Proteomes:UP000006548RefSeq:NP_181295.1scanprosite:PS01361
STRING:3702.AT2G37590.1TAIR:AT2G37590tair10-symbols:ATDOF2.4tair10-symbols:DOF2.4
UniGene:At.50120UniProt:C0SV78UniProt:O80928
Coordinates (TAIR10) chr2:+:15769292..15770497
Molecular Weight (calculated) 35332.40 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.73
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)