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AT5G02460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DNA binding with one finger 2.4 (TAIR:AT2G37590.1); Has 1212 Blast hits to 1182 proteins in 84 species: Archae - 0; Bacteria - 4; Metazoa - 69; Fungi - 10; Plants - 1097; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWHCeggNOG:ENOG410YQKSEMBL:AL162874EMBL:AL162971
EMBL:BX829408EMBL:CP002688EnsemblPlants:AT5G02460EnsemblPlants:AT5G02460.1
entrez:830976ExpressionAtlas:Q9LZ56GeneID:830976Genevisible:Q9LZ56
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0046872Gramene:AT5G02460.1hmmpanther:PTHR31992
hmmpanther:PTHR31992:SF8HOGENOM:HOG000239956InParanoid:Q9LZ56InterPro:IPR003851
KEGG:ath:AT5G02460OMA:IPPLRFMPaxDb:Q9LZ56Pfam:PF02701
Pfam:Q9LZ56Pfscan:PS50884PhylomeDB:Q9LZ56PIR:T48267
PRIDE:Q9LZ56PRO:PR:Q9LZ56ProDom:PD007478PROSITE:PS01361
PROSITE:PS50884ProteinModelPortal:Q9LZ56Proteomes:UP000006548RefSeq:NP_195866.1
scanprosite:PS01361STRING:3702.AT5G02460.1TAIR:AT5G02460UniGene:At.33412
UniProt:C0SVM8UniProt:Q9LZ56
Coordinates (TAIR10) chr5:-:539549..541058
Molecular Weight (calculated) 42533.10 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.62
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFSSFPTYP DHSSNWQQQH QPITTTVGFT GNNINQQFLP HHPLPPQQQQ TPPQLHHNNG NGGVAVPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC
101: DSTNTKFCYF NNYSLTQPRH FCKACRRYWT RGGALRSVPV GGGCRRNKRT KNSSGGGGGS TSSGNSKSQD SATSNDQYHH RAMANNQMGP PSSSSSLSSL
201: LSSYNAGLIP GHDHNSNNNN ILGLGSSLPP LKLMPPLDFT DNFTLQYGAV SAPSYHIGGG SSGGAAALLN GFDQWRFPAT NQLPLGGLDP FDQQHQMEQQ
301: NPGYGLVTGS GQYRPKNIFH NLISSSSSAS SAMVTATASQ LASVKMEDSN NQLNLSRQLF GDEQQLWNIH GAAAASTAAA TSSWSEVSNN FSSSSTSNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)