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AT3G15680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (nuclear marker)

RFP-At3g15680
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ran BP2/NZF zinc finger-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT5G25490.1); Has 1825 Blast hits to 997 proteins in 170 species: Archae - 0; Bacteria - 2; Metazoa - 978; Fungi - 140; Plants - 475; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YNCKeggNOG:KOG4198EMBL:AB017071EMBL:BT024866
EMBL:CP002686EnsemblPlants:AT3G15680EnsemblPlants:AT3G15680.1entrez:820811
Gene3D:4.10.1060.10GeneID:820811GO:GO:0008270GO:GO:0016301
Gramene:AT3G15680.1hmmpanther:PTHR23111hmmpanther:PTHR23111:SF34InterPro:IPR001876
KEGG:ath:AT3G15680OMA:GTFKDETPfam:PF00641Pfscan:PS50199
PhylomeDB:Q9LW11PROSITE:PS01358PROSITE:PS50199Proteomes:UP000006548
RefSeq:NP_188189.1scanprosite:PS01358SMART:SM00547SMR:Q9LW11
STRING:3702.AT3G15680.1SUPFAM:SSF90209TAIR:AT3G15680UniGene:At.43060
UniProt:Q9LW11
Coordinates (TAIR10) chr3:+:5315437..5316048
Molecular Weight (calculated) 17564.30 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.62
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRPGDWNCR SCSHLNFQRR DSCQRCGDSR SGPGGVGGLD FGNFGGRAMS AFGFTTGSDV RPGDWYCTVG NCGTHNFASR STCFKCGTFK DETGAGGGGG
101: GIGGPAMFDA DIMRSRVPGN GGRSSWKSGD WICTRIGCNE HNFASRMECF RCNAPRDFSN RTSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)