AT4G38660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pathogenesis-related thaumatin superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: THAUMATIN-LIKE PROTEIN 1 (TAIR:AT4G24180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18066448..18067984 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35439.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMNLSSRRAS STLTLSFTVL LLASTGSYGS TFTFANRCGY TVWPGILSNA GSPTLSTTGF ELPKGTSRSL QAPTGWSGRF WARTGCKFDS SGSGTCKTGD 101: CGSNAVECAG LGAAPPVTLA EFTLGTGGDD FYDVSLVDGY NIPMIVEVAG GSGQCASTGC TTDLNIQCPA ELRFGDGDAC KSACLAFRSP EYCCSGAYAT 201: PSSCRPSVYS EMFKAACPRS YSYAYDDATS TFTCAGGDYT VTFCPSSPSQ KSTSYSPPVT DSSSTSQGSD PVPGSDTGYA GQGQQTPGQG NVYGSQGTGS 301: EMGTGETMLQ DGSWMAGLAM GEASRPAGVS LTVLLAAFTF PFIFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)