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AT3G53190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G04310.1); Has 1735 Blast hits to 1728 proteins in 275 species: Archae - 0; Bacteria - 778; Metazoa - 0; Fungi - 236; Plants - 699; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G53190-MONOMERBioGrid:9802CAZy:PL1EC:4.2.2.2
eggNOG:COG3866eggNOG:ENOG410IGFPEMBL:AL132958EMBL:AY084835
EMBL:CP002686EnsemblPlants:AT3G53190EnsemblPlants:AT3G53190.1entrez:824485
ExpressionAtlas:Q9SCP2Gene3D:2.160.20.10GeneID:824485Genevisible:Q9SCP2
GO:GO:0030570GO:GO:0031225GO:GO:0045490GO:GO:0046872
Gramene:AT3G53190.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF21HOGENOM:HOG000237948
InParanoid:Q9SCP2InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334
InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT3G53190KO:K01728
OMA:RYTAPTNPaxDb:Q9SCP2Pfam:PF00544Pfam:Q9SCP2
PhylomeDB:Q9SCP2PIR:T46165PRIDE:Q9SCP2PRINTS:PR00807
PRO:PR:Q9SCP2ProteinModelPortal:Q9SCP2Proteomes:UP000006548RefSeq:NP_566979.1
SMART:SM00656SMR:Q9SCP2STRING:3702.AT3G53190.1SUPFAM:SSF51126
TAIR:AT3G53190TMHMM:TMhelixUniGene:At.28000UniGene:At.74285
UniPathway:UPA00545UniProt:Q56XU8UniProt:Q9SCP2
Coordinates (TAIR10) chr3:+:19714171..19717537
Molecular Weight (calculated) 53596.50 Da
IEP (calculated) 6.45
GRAVY (calculated) -0.22
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)