AT3G28220.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: vacuole, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT1G58270.1); Has 1242 Blast hits to 999 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:10524420..10526497 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42888.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.80 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||
| Length | 370 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEKGLIKKE DHMFQEEKRK TNYGAIGLAC FISCFFAFQF MKIVTTQPST TTTSSIAVID SPMSSHKLSD RREIWRVIPP STYCLKIESF IKFATSPNAE 101: KYESRPFESG GYNWTLIVYP KGNIKEGAPL NYVSMYVQID NSTLLNSPKE VYAEVKFFIY NRKEDKYLTY QETDAKRFFL FKPYWGYGNV RPYTDVANPN 201: AGWLFDGDNV LFGVDVFVTE VFNKWEVFSF TKSLHDRLYK WTLPNFSSLE KQYYVSDKFV IGGRSWALKV YPSGDGEGQG NSLSLYVVAV DVKPYDKIYL 301: KAKLRIINQR DSKHMEKKVE SWSDQANSWG FQKFVPFADL KDTSKGLLVN DTLKMEIEFE DFSNTKYFPS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)