AT1G52410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TSK-associating protein 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TSK-associating protein 1 (TSA1); FUNCTIONS IN: protein binding, calcium ion binding; INVOLVED IN: response to salt stress, defense response to fungus; LOCATED IN: chloroplast thylakoid membrane, peroxisome, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: DNA topoisomerase-related (TAIR:AT3G15950.1); Has 59847 Blast hits to 38717 proteins in 2386 species: Archae - 776; Bacteria - 9580; Metazoa - 25390; Fungi - 6405; Plants - 3006; Viruses - 316; Other Eukaryotes - 14374 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19520762..19525361 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84022.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.29 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 755 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIYTMKTNF LVLALSLCIL LSSFHEVSCQ DDGSGLSNLD LIERDYQDSV NALQGKDDED QSAKIQSENQ NNTTVTDKNT ISLSLSDESE VGSVSDESVG 101: RSSLLDQIKL EFEAHHNSIN QAGSDGVKAE SKDDDEELSA HRQKMLEEIE HEFEAASDSL KQLKTDDVNE GNDEEHSAKR QSLLEEIERE FEAATKELEQ 201: LKVNDFTGDK DDEEHSAKRK SMLEAIEREF EAAMEGIEAL KVSDSTGSGD DEEQSAKRLS MLEEIEREFE GLEQLRASDS TADNNEEEHA AKGQSLLEEI 301: EREFEAATES LKQLQVDDST EDKEHFTAAK RQSLLEEIER EFEAATKDLK QLNDFTEGSA DDEQSAKRNK MLEDIEREFE AATIGLEQLK ANDFSEGNNN 401: EEQSAKRKSM LEEIEREFEA AIGGLKQIKV DDSRNLEEES AKRKIILEEM EREFEEAHSG INAKADKEES AKKQSGSAIP EVLGLGQSGG CSCSKQDEDS 501: SIVIPTKYSI EDILSEESAV QGTETSSLTA SLTQLVENHR KEKESLLGHR VLTSPSIASS TSESSATSET VETLRAKLNE LRGLTARELV TRKDFGQILI 601: TAASFEELSS APISYISRLA KYRNVIKEGL EASERVHIAQ VRAKMLKEVA TEKQTAVDTH FATAKKLAQE GDALFVKIFA IKKLLAKLEA EKESVDGKFK 701: ETVKELSHLL ADASEAYEEY HGAVRKAKDE QAAEEFAKEA TQSAEIIWVK FLSSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)