AT1G52030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.969 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myrosinase-binding protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myrosinase-binding protein 2 (MBP2); FUNCTIONS IN: sugar binding, thioglucosidase binding; INVOLVED IN: flower development, cell adhesion, response to wounding, defense response; LOCATED IN: thioglucosidase complex; EXPRESSED IN: fruit, flower; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 60372 Blast hits to 16199 proteins in 1266 species: Archae - 330; Bacteria - 18155; Metazoa - 8870; Fungi - 2973; Plants - 10671; Viruses - 2735; Other Eukaryotes - 16638 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19346090..19348282 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68853.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 642 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY 101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG 201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA 301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE 401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG 501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA 601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)