AT2G39330.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.972 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : jacalin-related lectin 23 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
jacalin-related lectin 23 (JAL23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 22 (TAIR:AT2G39310.3); Has 1977 Blast hits to 736 proteins in 44 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 4; Plants - 1953; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:16419787..16421573 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50446.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 459 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAKIYRKLTG YGGEGGREWD DDVYEGVRKV YVGQDINRIT YVKFEYVKED GQVVTTEYGK IIQQPKEFVL QYPDEHIIAV EGNYRGVALC ATEVITNLVF 101: KTSKGRKSPL FGPNLLGITT GTKFVIEDGG KKIVGFHGRS GNALDALGVY FVHGSLTTSP PVYKLDAQGG TDGRVWDDGS YDGVKSLRIG QDNSRITYLE 201: FEYEKGGKLE TCRHGVKQER SLKFELNPDE YIKSVEATYD KPDIFRNVVI TSLTFETSKG RTSFSGYKGG KKFKLEQKGR RLVGFHGKEG SAIDALGAYF 301: APIPTPTPII PAKKLPAIGG SGGVAWDDGV YDGVRKILVG QGNDGVAFVK FEYNKGKDLV SGDDHGKMTL LGTEEFVLED GEYLTAIDGY YDKIFGVETP 401: MIICLQFKTN KRESTPFGMD SGEKFSLGEK GHKIVGFHGQ ASDVVHSIGV TVVPITNTK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)