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AT2G39330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : jacalin-related lectin 23
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
jacalin-related lectin 23 (JAL23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 22 (TAIR:AT2G39310.3); Has 1977 Blast hits to 736 proteins in 44 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 4; Plants - 1953; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:3856eggNOG:ENOG410JPHEeggNOG:ENOG410Y7QCEMBL:AC004697
EMBL:AY062098EMBL:AY087871EMBL:AY124879EMBL:CP002685
EnsemblPlants:AT2G39330EnsemblPlants:AT2G39330.1entrez:818518Gene3D:2.100.10.30
GeneID:818518Genevisible:O80948GO:GO:0005773GO:GO:0009506
GO:GO:0030246Gramene:AT2G39330.1hmmpanther:PTHR23244hmmpanther:PTHR23244:SF208
HOGENOM:HOG000015149InParanoid:O80948InterPro:IPR001229KEGG:ath:AT2G39330
MINT:MINT-8064563OMA:DINRITYPaxDb:O80948Pfam:O80948
Pfam:PF01419Pfscan:PS51752PhylomeDB:O80948PIR:T02569
PRIDE:O80948PRO:PR:O80948PROSITE:PS51752ProteinModelPortal:O80948
Proteomes:UP000006548RefSeq:NP_181465.1SMART:SM00915SMR:O80948
STRING:3702.AT2G39330.1SUPFAM:SSF51101SWISS-2DPAGE:O80948TAIR:AT2G39330
tair10-symbols:JAL23UniGene:At.22280UniProt:O80948
Coordinates (TAIR10) chr2:-:16419787..16421573
Molecular Weight (calculated) 50446.00 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.38
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKIYRKLTG YGGEGGREWD DDVYEGVRKV YVGQDINRIT YVKFEYVKED GQVVTTEYGK IIQQPKEFVL QYPDEHIIAV EGNYRGVALC ATEVITNLVF
101: KTSKGRKSPL FGPNLLGITT GTKFVIEDGG KKIVGFHGRS GNALDALGVY FVHGSLTTSP PVYKLDAQGG TDGRVWDDGS YDGVKSLRIG QDNSRITYLE
201: FEYEKGGKLE TCRHGVKQER SLKFELNPDE YIKSVEATYD KPDIFRNVVI TSLTFETSKG RTSFSGYKGG KKFKLEQKGR RLVGFHGKEG SAIDALGAYF
301: APIPTPTPII PAKKLPAIGG SGGVAWDDGV YDGVRKILVG QGNDGVAFVK FEYNKGKDLV SGDDHGKMTL LGTEEFVLED GEYLTAIDGY YDKIFGVETP
401: MIICLQFKTN KRESTPFGMD SGEKFSLGEK GHKIVGFHGQ ASDVVHSIGV TVVPITNTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)