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AT4G15210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-amylase 5
Curator
Summary (TAIR10)
cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.
Computational
Description (TAIR10)
beta-amylase 5 (BAM5); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: response to herbivore, starch catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 6 (TAIR:AT2G32290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1125-MONOMERCAZy:GH14EC:3.2.1.2eggNOG:ENOG410IJER
eggNOG:ENOG410XNXSEMBL:AF424573EMBL:AK226353EMBL:AK316869
EMBL:AL161540EMBL:AY142024EMBL:CP002687EMBL:D43783
EMBL:M73467EMBL:S77076EMBL:Z97338EnsemblPlants:AT4G15210
EnsemblPlants:AT4G15210.1entrez:827185Gene3D:3.20.20.80GeneID:827185
Genevisible:P25853GO:GO:0005829GO:GO:0005983GO:GO:0016161
GO:GO:0080027gramene_pathway:3.2.1.2gramene_pathway:PWY-842hmmpanther:PTHR31352
hmmpanther:PTHR31352:SF5HOGENOM:HOG000238755InParanoid:P25853InterPro:IPR001371
InterPro:IPR001554InterPro:IPR013781InterPro:IPR017853InterPro:IPR018238
iPTMnet:P25853KEGG:00500+3.2.1.2KEGG:ath:AT4G15210OMA:YADYMKS
PaxDb:P25853Pfam:P25853Pfam:PF01373PhylomeDB:P25853
PIR:B71416PRIDE:P25853PRINTS:PR00750PRINTS:PR00842
PRO:PR:P25853PROSITE:PS00506PROSITE:PS00679ProteinModelPortal:P25853
Proteomes:UP000006548RefSeq:NP_567460.1RefSeq:NP_849389.1scanprosite:PS00506
scanprosite:PS00679SMR:P25853STRING:3702.AT4G15210.1SUPFAM:SSF51445
TAIR:AT4G15210tair10-symbols:AT-BETA-AMYtair10-symbols:ATBETA-AMYtair10-symbols:BAM5
tair10-symbols:BMY1tair10-symbols:RAM1UniGene:At.25187UniProt:P25853
Coordinates (TAIR10) chr4:-:8666734..8669357
Molecular Weight (calculated) 56065.50 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.37
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNYNEKLL LNYVPVYVML PLGVVNVENV FADPETLETQ LKRLKEEAGV DGVMVDVWWG IIESKGPKQY DWTAYKTLFQ LIARLGLKIQ AIMSFHQCGG
101: NVGDIVTIPI PQWVRDVGDN DPDIYYTNRK GTRDIEYLSI GVDNLPLFAG RTAVQLYSDY MSSFKENMAD LIEAGVIVDI EVGLGPAGEL RYPSYPQSQG
201: WVFPGIGEFQ CYDKYLKKDF KEAAAKAGHP EWDLPEDAGE YNDKPEETGF FKKDGTYVSE KGKFFMTWYS NKLIFHGDQI LGEANKIFAG LKVNLAAKVS
301: GIHWLYNHHS HAAELTAGYY NLFKRDGYRP IARMLSKHYG ILNFTCLEMK DTDNTAEALS APQELVQEVL SKAWKEGIEV AGENALETYG AKGYNQILLN
401: ARPNGVNPNG KPKLRMYGFT YLRLSDTVFQ ENNFELFKKL VRKMHADQDY CGDAAKYGHE IVPLKTSNSQ LTLEDIADAA QPSGAFKWDS ETDLKVDG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)