AT4G16590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cellulose synthase-like A01 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a gene similar to cellulose synthase | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase-like A01 (CSLA01); FUNCTIONS IN: cellulose synthase activity, glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A10 (TAIR:AT1G24070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9345757..9349039 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46284.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||
| Length | 401 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDLVVQVVD DSTDPAVREG VDVEIAKWQS QGINIRCERR DNRNGYKAGA MKEALTQSYV KQCDFVAVFD ADFQPEPDYL IRAVPFLVHN PDVALVQARW 101: IFVNANKCLM TRMQEMSLNY HFKVEQESGS TRHAFFGFNG TAGVWRISAM EAAGGWKSRT TVEDMDLAVR VGLHGWKFVY LNDLTVRNEL PSKFKAYRFQ 201: QHRWSCGPAN LFRKMTMEII FNKRVSIWKK FYVIYSFFFV RKVAVHFLTF FFYCIIVPTS VFFPEIHIPS WSTIYVPSLI SIFHTLATPR SFYLVIFWVL 301: FENVMAMHRT KGTCIGLLEG GRVNEWVVTE KLGDALKSKL LSRVVQRKSC YQRVNSKEVM VGVYILGCAL YGLIYGHTWL HFYLFLQATA FFVSGFGFVG 401: T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)