AT4G15200.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.646 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : formin 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Actin nucleation factor that directs the formation of actin cables in pollen tubes. Involved in cytoplasmic streaming and polarized growth in pollen tubes. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
formin 3 (FH3); CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: formin homology5 (TAIR:AT5G54650.2); Has 4532 Blast hits to 3854 proteins in 397 species: Archae - 0; Bacteria - 318; Metazoa - 1880; Fungi - 396; Plants - 835; Viruses - 88; Other Eukaryotes - 1015 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:8662993..8665759 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83635.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.84 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||
| Length | 764 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRLRLAFLA ISLVVFVCVS EEIFSRGGLN LLRFSVYGED VAEQTWIHQN PRRKLISYPK KFSVSAPNLA FGPAPSFAPG PGPSFAPGPA PNPRSYDWLA 101: PASSPNEPPA ETPDESSPSP SEETPSVVAP SQSVPGPPRP PPQREKKDDI LMKLIIAVAS TAVLTFVFVA LMFLCCFKRN CNNAVGSRDG PRDEGPLLRL 201: STGSTENSPT VASTSRKMFS VASSKKRSFL SRVSLKRNGH EFSTAESSSA AGLPPLKLPP GRSAPPPPPA AAPPPQPPPP PPPKPQPPPP PKIARPPPAP 301: PKGAAPKRQG NTSSGDASDV DSETGAPKTK LKPFFWDKMA NPDQKMVWHE ISAGSFQFNE EAMESLFGYN DGNKNKNGQK STDSSLRESP LQYIQIIDTR 401: KAQNLSILLR ALNVTTEEVV DAIKEGNELP VELLQTLLKM APTSEEELKL RLYSGDLHLL GPAERFLKIL VDIPFAFKRI ESLLFMISLQ EEVSGLKEAL 501: GTLEVACKKL RNSRLFLKLL EAVLKTGNRM NVGTFRGDAQ AFKLDTLLKL SDVKGTDGKT TLLHFVVLEI IRSEGVRALR LQSRSFSSVK TDDSNADSKL 601: EDVKRAAIID ADGLAATLAN ISGSLTNARE FLKTMDEESD FERALAGFIE RADADFKWLK EEEERIMVLV KSSADYFHGK SAKNEGLRLF AIVRDFLIML 701: EKVCREVKET TKTTNHSGKK ESEMTTSDSN QPSPDFRQRL FPAIAERRMD SSDDSDDEED SSPS |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)