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AT5G38120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 83515 Blast hits to 76136 proteins in 3676 species: Archae - 1169; Bacteria - 53948; Metazoa - 3493; Fungi - 4649; Plants - 2738; Viruses - 1; Other Eukaryotes - 17517 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G38120-MONOMEREC:6.2.1.-eggNOG:COG0318eggNOG:KOG1176
EMBL:AB005247EMBL:AK118041EMBL:AY250832EMBL:AY376735
EMBL:BT005689EMBL:CP002688EnsemblPlants:AT5G38120EnsemblPlants:AT5G38120.1
entrez:833792GeneID:833792Genevisible:Q84P26GO:GO:0005524
GO:GO:0005777GO:GO:0016874Gramene:AT5G38120.1hmmpanther:PTHR24096
hmmpanther:PTHR24096:SF186HOGENOM:HOG000230009InParanoid:Q84P26InterPro:IPR000873
InterPro:IPR020845InterPro:IPR025110KEGG:ath:AT5G38120OMA:AGEGYWN
PaxDb:Q84P26Pfam:PF00501Pfam:PF13193Pfam:Q84P26
PhylomeDB:Q84P26PRIDE:Q84P26PRO:PR:Q84P26PROSITE:PS00455
ProteinModelPortal:Q84P26Proteomes:UP000006548Reactome:R-ATH-75105RefSeq:NP_198628.2
scanprosite:PS00455SMR:Q84P26STRING:3702.AT5G38120.1SUPFAM:SSF56801
TAIR:AT5G38120tair10-symbols:4CL8TMHMM:TMhelixUniGene:At.30435
UniGene:At.68167UniProt:Q84P26
Coordinates (TAIR10) chr5:+:15213773..15216137
Molecular Weight (calculated) 60396.40 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.02
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSQRSSSL IDPRNGFCTS NSTFYSKRKP LALPSKESLD ITTFISSQTY RGKTAFIDAA TDHRISFSDL WMAVDRVADC LLHDVGIRRG DVVLVLSPNT
101: ISIPIVCLSV MSLGAVLTTA NPLNTASEIL RQIADSNPKL AFTTPELAPK IASSGISIVL ERVEDTLRVP RGLKVVGNLT EMMKKEPSGQ AVRNQVHKDD
201: TAMLLYSSGT TGRSKGVNSS HGNLIAHVAR YIAEPFEQPQ QTFICTVPLF HTFGLLNFVL ATLALGTTVV ILPRFDLGEM MAAVEKYRAT TLILVPPVLV
301: TMINKADQIM KKYDVSFLRT VRCGGAPLSK EVTQGFMKKY PTVDVYQGYA LTESNGAGAS IESVEESRRY GAVGLLSCGV EARIVDPNTG QVMGLNQTGE
401: LWLKGPSIAK GYFRNEEEII TSEGWLKTGD LCYIDNDGFL FIVDRLKELI KYKGYQVPPA ELEALLLNHP DILDAAVIPF PDKEAGQFPM AYVARKPESN
501: LCEKKVIDFI SKQVAPYKKI RKVAFIDSIP KTPSGKTLRK DLIKFAISKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)