AT4G24010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cellulose synthase like G1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein similar to cellulose synthase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase like G1 (CSLG1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, sepal, male gametophyte, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase like G3 (TAIR:AT4G23990.1); Has 3059 Blast hits to 2371 proteins in 475 species: Archae - 2; Bacteria - 903; Metazoa - 2; Fungi - 10; Plants - 2111; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12466391..12469760 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86578.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.09 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 760 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METHRKNSVV GNILHTCHPC RRTIPYRIYA IFHTCGIIAL MYHHVHSLVT ANNTLITCLL LLSDIVLAFM WATTTSLRLN PVHRTECPEK YAAKPEDFPK 101: LDVFICTADP YKEPPMMVVN TALSVMAYEY PSDKISVYVS DDGGSSLTFF ALIEAAKFSK QWLPFCKKNN VQDRSPEVYF SSESHSRSDE AENLKMMYED 201: MKSRVEHVVE SGKVETAFIT CDQFRGVFDL WTDKFSRHDH PTIIQVLQNS ETDMDNTRKY IMPNLIYVSR EKSKVSPHHF KAGALNTLLR VSGVMTNSPI 301: ILTLDCDMYS NDPATLVRAL CYLTDPEIKS GLGYVQFPQK FLGISKNDIY ACENKRLFII NMVGFDGLMG PTHVGTGCFF NRRAFYGPPY MLILPEINEL 401: KPYRIADKSI KAQDVLSLAH NVAGCIYEYN TNWGSKIGFR YGSLVEDYYT GFMLHCEGWR SVFCNPKKAA FYGDSPKCLV DLVGQQIRWA VGLFEMSFSK 501: YSPITYGIKS LDLLMGLGYC NSPFKPFWSI PLTVYGLLPQ LALISGVSVF PKASDPWFWL YIILFFGAYA QDLSDFLLEG GTYRKWWNDQ RMLMIKGLSS 601: FFFGFIEFIL KTLNLSTPKF NVTSKANDDD EQRKRYEQEI FDFGTSSSMF LPLTTVAIVN LLAFVWGLYG ILFCGGELYL ELMLVSFAVV NCLPIYGAMV 701: LRKDDGKLSK RTCFLAGNLH VGSYCVKLLR PQVTSPLRLI HNNNTSGWFK RKKHNMNESV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)