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AT5G07690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 29
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB29).
Computational
Description (TAIR10)
myb domain protein 29 (MYB29); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 76 (TAIR:AT5G07700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15941eggNOG:COG5147eggNOG:KOG0048EMBL:AB010070
EMBL:AF062872EMBL:AY035145EMBL:AY059078EMBL:AY519617
EMBL:CP002688EnsemblPlants:AT5G07690EnsemblPlants:AT5G07690.1entrez:830662
Gene3D:1.10.10.60GeneID:830662Genevisible:Q9FLR1GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009414GO:GO:0009611GO:GO:0009617GO:GO:0009625
GO:GO:0009682GO:GO:0009739GO:GO:0009751GO:GO:0009753
GO:GO:0010438GO:GO:0010439GO:GO:0050832Gramene:AT5G07690.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF537HOGENOM:HOG000237600InParanoid:Q9FLR1
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G07690
KO:K09422OMA:DHMKEDIPaxDb:Q9FLR1Pfam:PF00249
Pfam:Q9FLR1Pfscan:PS51294PhylomeDB:Q9FLR1PIR:T51644
PRIDE:Q9FLR1PRO:PR:Q9FLR1PROSITE:PS51294ProteinModelPortal:Q9FLR1
Proteomes:UP000006548RefSeq:NP_196386.1SMART:SM00717SMR:Q9FLR1
STRING:3702.AT5G07690.1SUPFAM:SSF46689TAIR:AT5G07690tair10-symbols:ATMYB29
tair10-symbols:MYB29tair10-symbols:PMG2UniGene:At.9094UniProt:Q9FLR1
Coordinates (TAIR10) chr5:+:2447090..2448285
Molecular Weight (calculated) 37967.90 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.82
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRKPCCVGE GLKKGAWTAE EDKKLISYIH EHGEGGWRDI PQKAGLKRCG KSCRLRWANY LKPDIKRGEF SYEEEQIIIM LHASRGNKWS VIARHLPKRT
101: DNEIKNYWNT HLKKLLIDKG IDPVTHKPLA YDSNPDEQSQ SGSISPKSLP PSSSKNVPEI TSSDETPKYD ASLSSKKRCF KRSSSTSKLL NKVAARASSM
201: GTILGASIEG TLISSTPLSS CLNDDFSETS QFQMEEFDPF YQSSEHIIDH MKEDISINNS EYDFSQFLEQ FSNNEGEEAD NTGGGYNQDL LMSDVSSTSV
301: DEDEMMQNIT GWSNYLLDHS DFNYDTSQDY DDKNFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)