AT4G17470.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G17480.1); Has 628 Blast hits to 624 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 330; Fungi - 94; Plants - 142; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:9742922..9744468 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 34190.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 308 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEKSFQRSAL LVTLSLFFFS IPVSLSVPFV LFHGFGGECS NDKVSNLTQF LINHSGYPGT CVEIGDGVKD SLFMPLRQQA SIACEKIKQM PELSEGYNIV 101: AESQGNLVAR GLIEFCDNAP PVINYVSLGG PHAGVAAIPE GCDSAFCILM KAFFAVIYSD FAQDHTAPSG YVKKPMEIKN YLEHSKYLPK LNNERPGEKN 201: STFKDRFTSL QNLVLIMFQN DTILVPRETS WFGYYPDGAS SSTPVLPPQK TKLYTEDWIG LKTLDDAGKV RFISVPGGHI EITEEDLVKY VVPYLQNESL 301: FSSEHETI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)