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AT4G17470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G17480.1); Has 628 Blast hits to 624 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 330; Fungi - 94; Plants - 142; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17470-MONOMERBioCyc:ARA:GQT-1204-MONOMERBioCyc:ARA:GQT-2462-MONOMEReggNOG:COG1075
eggNOG:KOG2541EMBL:BT022000EMBL:CP002687EnsemblPlants:AT4G17470
EnsemblPlants:AT4G17470.1EnsemblPlants:AT4G17470.2EnsemblPlants:AT4G17470.3entrez:827458
ESTHER:arath-AT4G17470Gene3D:3.40.50.1820GeneID:827458GO:GO:0002084
GO:GO:0008474Gramene:AT4G17470.1Gramene:AT4G17470.2Gramene:AT4G17470.3
gramene_pathway:3.1.2.2gramene_pathway:PWY-5148hmmpanther:PTHR11247hmmpanther:PTHR11247:SF8
HOGENOM:HOG000199232InterPro:IPR002472InterPro:IPR029058InterPro:IPR030294
KEGG:ath:AT4G17470KO:K01074OMA:VPYLQNEPANTHER:PTHR11247:SF8
Pfam:PF02089PhylomeDB:Q501G7PRINTS:PR00414Proteomes:UP000006548
Reactome:R-ATH-75876RefSeq:NP_001190752.1RefSeq:NP_001190753.1RefSeq:NP_193477.1
SMR:Q501G7STRING:3702.AT4G17470.1SUPFAM:SSF53474TAIR:AT4G17470
TMHMM:TMhelixUniGene:At.21864UniProt:Q501G7
Coordinates (TAIR10) chr4:-:9742922..9744468
Molecular Weight (calculated) 34190.90 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.08
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSFQRSAL LVTLSLFFFS IPVSLSVPFV LFHGFGGECS NDKVSNLTQF LINHSGYPGT CVEIGDGVKD SLFMPLRQQA SIACEKIKQM PELSEGYNIV
101: AESQGNLVAR GLIEFCDNAP PVINYVSLGG PHAGVAAIPE GCDSAFCILM KAFFAVIYSD FAQDHTAPSG YVKKPMEIKN YLEHSKYLPK LNNERPGEKN
201: STFKDRFTSL QNLVLIMFQN DTILVPRETS WFGYYPDGAS SSTPVLPPQK TKLYTEDWIG LKTLDDAGKV RFISVPGGHI EITEEDLVKY VVPYLQNESL
301: FSSEHETI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)