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AT5G23820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AdaBoost: plasma membraneBaCelLo: endoplasmic reticulumBaCelLo: extracellularBaCelLo: golgi
EpiLoc: plasma membraneiPSORT: endoplasmic reticulumiPSORT: extracellulariPSORT: golgi
MultiLoc: extracellularPlant-mPloc: mitochondrionPlant-mPloc: nucleusPlant-mPloc: plasma membrane
Predotar: endoplasmic reticulumPredotar: extracellularPredotar: golgiPredSL: endoplasmic reticulum
PredSL: extracellularPredSL: golgiPProwler: endoplasmic reticulumPProwler: extracellular
PProwler: golgiSLPFA: endoplasmic reticulumSLPFA: extracellularSLPFA: golgi
SLP-Local: endoplasmic reticulumSLP-Local: extracellularSLP-Local: golgiSubLoc: extracellular
TargetP: endoplasmic reticulumTargetP: extracellularTargetP: golgiWoLF PSORT: extracellular
YLoc: extracellular
 AmiGO : vacuole 15539469
TAIR : vacuole 15539469
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903439 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:18998720 (2009): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MD-2-related lipid recognition domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 MD-2-related lipid recognition domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein (TAIR:AT5G23840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTG5eggNOG:ENOG41107VMEMBL:AB005244EMBL:AY050390
EMBL:AY097347EMBL:CP002688EMBL:DQ785475EnsemblPlants:AT5G23820
EnsemblPlants:AT5G23820.1entrez:832447GeneID:832447GO:GO:0000325
GO:GO:0005773GO:GO:0006952GO:GO:0010168Gramene:AT5G23820.1
HOGENOM:HOG000240475IntAct:Q9FF98InterPro:IPR003172KEGG:ath:AT5G23820
OMA:GTNFELTPfam:PF02221PhylomeDB:Q9FF98Proteomes:UP000006548
RefSeq:NP_197771.1SMART:SM00737STRING:3702.AT5G23820.1TAIR:AT5G23820
UniGene:At.23358UniProt:Q9FF98
Coordinates (TAIR10) chr5:+:8031386..8032809
Molecular Weight (calculated) 17908.50 Da
IEP (calculated) 4.31
GRAVY (calculated) 0.22
Length 164 amino acids
Sequence (TAIR10)
(BLAST) 		001: MAMSHVQPML LLLVSLFFLP ALRGAIDFEY CAKNGNDYGT VTSIVVSPSV GPHENPTITI NLFGSASKNI PAGTLVYVAF RDGEFTGLLK TYNLCDVSAC
101: NNEAEIEAGT NFELTLSDVL YVGYDEEIKY SVSLRRKTLE EEDPIIKMCV DFKVPAPAPA FVSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)