AT3G15950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 ASURE: endoplasmic reticulum What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA topoisomerase-related | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NAI2; INVOLVED IN: ER body organization, response to salt stress; LOCATED IN: peroxisome, membrane, ER body; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: TSK-associating protein 1 (TAIR:AT1G52410.2); Has 54717 Blast hits to 36231 proteins in 2578 species: Archae - 1044; Bacteria - 11642; Metazoa - 21799; Fungi - 5619; Plants - 2799; Viruses - 308; Other Eukaryotes - 11506 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5397783..5402610 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85020.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.33 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 772 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTKFLALGL SLCLVLSSFY QVSCQDEGTG SLSTLDLIEH EYQTSVNSLQ GNEAVDQTET SGQKNSTVSD NNTISLSLSE EPALETLKES VDTSAELGAV 101: TDEVDKPSSM LDHIELEFEA HINELKEAGS DGINKVEESK DDEEAARRHK MLEAIEREFE AAHAGFEQLK TDDSAQGLDD EQSAKRQSML DEIERDFEAA 201: TKGLEQLKAD DLTGINDEEH AAKRQKMLEE IEREFEEATK GLEELRHSTS STDDEAQSAK RQNMLDEIER EFEAATSGLK ELKINAHTVK DDVDDKEQDA 301: KRQSMLDAIE REFEAVTESF KQLEDIADNK AEGDDESAKR QSMLDEIERE FEAATNSLKQ LNLDDFSEGD DSAESARRNS MLEAIEREFE AATKGLEELK 401: ANDSTGDKDD DEHVARRKIM LEAIEREFEA ATKGLEELKN ESEQAENKRN SMLEAFEREF EAATNAKANG ENSAKNPSTI STTVQKSSGG YNAGLEGLLK 501: PADGVCGCFN KDKDGLQADT DSSINIAEIL AEESKLQGSG TSRLTTSLNN LVDTHRKETS SKVGSVLGSS SSVTSTTSES AATSESIESL KQTLRKLRGL 601: SARDLVNHPN FDAIIAAGTR YEVLSSASIG YISLLAKYKT VIKEGLEASQ RVQIAQTRAK LLKETAMEKQ RTVDSVFAAA KTTAQRGDAL HIRIVAIKKL 701: LAKLEAEKVD VDSKFTSLTT SLSELLKEAS QAYEEYHEAV HKAKDEQAAE EFAVETTKRA EHIWVEFLSS LN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)